Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 1.1e-59 233.0 109 100.0
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 5.3e-59 230.7 109 99.1
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.0e-49 199.9 100 87.0
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.0e-49 197.6 99 86.9
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 5.0e-49 197.6 99 88.9
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 5.0e-49 197.6 99 88.9
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 5.0e-49 197.6 104 83.7
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.9e-48 195.7 100 89.0
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 2.5e-48 195.3 107 84.1
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 3.2e-48 194.9 96 92.7
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 4.2e-48 194.5 99 87.9
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 5.5e-48 194.1 107 85.0
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 1.0e-46 189.9 99 84.8
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 1.0e-46 189.9 99 85.9
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.8e-46 189.1 100 85.0
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.8e-46 189.1 105 83.8
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.3e-46 188.7 99 84.8
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 2.3e-46 188.7 105 81.9
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 2.3e-46 188.7 100 85.0
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 3.9e-46 188.0 99 86.9
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.9e-46 188.0 95 87.4
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.9e-46 188.0 95 87.4
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 5.2e-46 187.6 106 82.1
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 6.7e-46 187.2 97 86.6
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 6.7e-46 187.2 97 86.6
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 8.8e-46 186.8 100 82.0
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 8.8e-46 186.8 105 81.0
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.1e-45 186.4 100 83.0
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.5e-45 186.0 105 81.9
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.5e-45 186.0 100 82.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.5e-45 186.0 100 82.0
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.5e-45 186.0 105 81.9
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 2.0e-45 185.7 106 80.2
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 2.0e-45 185.7 104 83.7
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.0e-45 185.7 102 80.4
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.6e-45 185.3 100 82.0
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 2.6e-45 185.3 100 83.0
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 3.3e-45 184.9 99 83.8
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 3.3e-45 184.9 99 83.8
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.3e-45 184.9 100 82.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 3.3e-45 184.9 108 82.4
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.4e-45 184.5 100 81.0
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 4.4e-45 184.5 100 83.0
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 4.4e-45 184.5 100 82.0
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 5.7e-45 184.1 100 82.0
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 5.7e-45 184.1 100 81.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 5.7e-45 184.1 98 82.7
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 9.7e-45 183.3 100 82.0
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 9.7e-45 183.3 100 82.0
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 9.7e-45 183.3 100 82.0
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 1.3e-44 183.0 107 81.3
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 1.7e-44 182.6 100 81.0
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.7e-44 182.6 100 83.0
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.2e-44 182.2 100 81.0
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.2e-44 182.2 100 81.0
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 2.2e-44 182.2 110 77.3
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 2.2e-44 182.2 96 85.4
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 2.8e-44 181.8 97 83.5
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 2.8e-44 181.8 97 84.5
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 3.7e-44 181.4 97 82.5
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 4.8e-44 181.0 100 81.0
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 8.2e-44 180.3 95 84.2
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 8.2e-44 180.3 99 79.8
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 1.1e-43 179.9 99 82.8
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 81.4
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 1.4e-43 179.5 100 81.0
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 2.4e-43 178.7 109 76.1
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 4.1e-43 177.9 99 79.8
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 5.3e-43 177.6 98 82.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 5.3e-43 177.6 98 82.7
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 9.1e-43 176.8 105 79.0
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 1.6e-42 176.0 96 80.2
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 1.6e-42 176.0 104 77.9
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.6e-42 176.0 96 81.2
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 2.0e-42 175.6 96 79.2
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 2.6e-42 175.3 98 79.6
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 2.6e-42 175.3 101 79.2
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.6e-42 175.3 95 82.1
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 2.6e-42 175.3 105 75.2
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 4.5e-42 174.5 108 75.0
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.3e-41 172.9 100 80.0
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.7e-41 172.6 108 75.0
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 2.9e-41 171.8 108 74.1
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 2.9e-41 171.8 99 79.8
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 2.9e-41 171.8 106 77.4
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 2.9e-41 171.8 108 76.9
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 2.9e-41 171.8 110 77.3
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.8e-41 171.4 108 75.0
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 3.8e-41 171.4 108 75.0
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 5.0e-41 171.0 99 78.8
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 5.0e-41 171.0 99 78.8
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 5.0e-41 171.0 99 78.8
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 6.5e-41 170.6 99 78.8
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 6.5e-41 170.6 99 76.8
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.1e-40 169.9 99 77.8
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.1e-40 169.9 100 78.0
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.5e-40 169.5 99 78.8
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.9e-40 169.1 100 76.0
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.9e-40 169.1 99 77.8
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.5e-40 168.7 99 77.8
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 2.5e-40 168.7 99 78.8
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 3.2e-40 168.3 99 76.8
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 4.2e-40 167.9 108 73.1
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 4.2e-40 167.9 99 76.8
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 4.2e-40 167.9 99 76.8
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 4.2e-40 167.9 99 76.8
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 4.2e-40 167.9 105 77.1
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.2e-40 167.9 105 77.1
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.2e-40 167.9 105 77.1
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.2e-40 167.9 105 77.1
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.2e-40 167.9 105 77.1
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 4.2e-40 167.9 99 76.8
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 9.4e-40 166.8 99 76.8
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 9.4e-40 166.8 99 76.8
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 9.4e-40 166.8 106 76.4
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 1.2e-39 166.4 99 77.8
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-39 166.4 99 77.8
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 1.2e-39 166.4 99 77.8
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 1.2e-39 166.4 99 77.8
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 1.2e-39 166.4 99 77.8
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.2e-39 166.4 100 75.0
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 2.7e-39 165.2 99 75.8
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 2.7e-39 165.2 99 75.8
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 4.7e-39 164.5 99 74.7
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 4.7e-39 164.5 98 80.6
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 4.7e-39 164.5 100 76.0
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 8.0e-39 163.7 97 76.3
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 8.0e-39 163.7 101 73.3
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 2.3e-38 162.2 98 76.5
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 2.3e-38 162.2 104 69.2
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 3.0e-38 161.8 95 75.8
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 1.2e-37 159.8 98 72.4
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.5e-34 147.9 82 76.8
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 5.9e-34 147.5 71 90.1
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.7e-33 146.0 89 76.4
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 5.0e-33 144.4 84 77.4
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 3.4e-29 131.7 68 85.3
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 2.0e-26 122.5 74 75.7
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 3.5e-26 121.7 71 73.2
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.3e-25 119.8 84 66.7
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 2.3e-25 119.0 84 66.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 2.3e-25 119.0 74 77.0
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 8.6e-25 117.1 68 75.0
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 3.3e-24 115.2 82 64.6
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.6e-23 112.8 82 63.4
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 1.4e-22 109.8 65 73.8
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 3.4e-21 105.1 84 54.8
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 2.2e-20 102.4 89 52.8
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 1.8e-19 99.4 59 69.5
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 9.2e-19 97.1 100 54.0
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 8.0e-15 84.0 71 49.3
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 1.8e-14 82.8 72 56.9
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 6.4e-12 74.3 54 66.7
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 3.2e-11 72.0 50 66.0
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 9.2e-11 70.5 36 86.1
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.0e-09 67.0 84 39.3
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 1.7e-09 66.2 36 80.6
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.7e-09 66.2 48 60.4


User provided reference genes

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