Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2610 Cannabis sativa HOM05D008297 ORTHO05D010093 9.7e-59 229.9 117 100.0
CiPaw.10G008500 Carya illinoinensis HOM05D008297 ORTHO05D010093 3.4e-27 125.2 129 54.3
Thecc.05G087300 Theobroma cacao HOM05D008297 ORTHO05D010093 3.4e-27 125.2 110 57.3
MD12G1023800 Malus domestica HOM05D008297 ORTHO05D010093 3.5e-24 115.2 116 57.8
FAN09G3035 Fragaria x ananassa HOM05D008297 ORTHO05D010093 3.3e-22 108.6 115 51.3
Duzib093G1918 Durio zibethinus HOM05D008297 ORTHO05D010093 2.8e-21 105.5 107 51.4
FAN02G0390 Fragaria x ananassa HOM05D008297 ORTHO05D010093 2.8e-21 105.5 102 54.9
Dinv31675 Davidia involucrata HOM05D008297 ORTHO05D010093 6.2e-21 104.4 99 57.6
FAN05G0196 Fragaria x ananassa HOM05D008297 ORTHO05D010093 6.2e-21 104.4 102 54.9
Prupe.7G112700 Prunus persica HOM05D008297 ORTHO05D010093 8.0e-21 104.0 122 53.3
FvH4_6g18470 Fragaria vesca HOM05D008297 ORTHO05D010093 1.1e-20 103.6 102 55.9
FAN14G3031 Fragaria x ananassa HOM05D008297 ORTHO05D010093 2.3e-20 102.4 102 54.9
FAN05G0841 Fragaria x ananassa HOM05D008297 ORTHO05D010093 3.1e-20 102.1 102 53.9
QL07p039287 Quercus lobata HOM05D008297 ORTHO05D010093 3.1e-20 102.1 130 48.5
CiPaw.09G012800 Carya illinoinensis HOM05D008297 ORTHO05D010093 1.5e-19 99.8 105 50.5
Haze_19594 Corylus avellana HOM05D008297 ORTHO05D010093 1.5e-19 99.8 119 45.4
Cfa016593 Carpinus fangiana HOM05D008297 ORTHO05D010093 3.4e-19 98.6 120 44.2
Medtr1g060240 Medicago truncatula HOM05D008297 ORTHO05D010093 6.4e-18 94.4 103 58.3
Lalb_Chr06g0173271 Lupinus albus HOM05D008297 ORTHO05D010093 1.4e-17 93.2 119 49.6
Lj5g0010223 Lotus japonicus HOM05D008297 ORTHO05D010093 2.4e-17 92.4 102 54.9
MD14G1021000 Malus domestica HOM05D008297 ORTHO05D010093 2.4e-17 92.4 90 55.6
PGR004G2620 Punica granatum HOM05D008297 ORTHO05D010093 4.1e-17 91.7 109 53.2
TPR.G24588 Trifolium pratense HOM05D008297 ORTHO05D010093 7.0e-17 90.9 102 53.9
Glyma.10G071300 Glycine max HOM05D008297 ORTHO05D010093 9.2e-17 90.5 119 47.9
Cpa.g.sc5.36 Carica papaya HOM05D008297 ORTHO05D010093 4.6e-16 88.2 97 48.5
COL.COLO4_29766 Corchorus olitorius HOM05D008297 ORTHO05D010093 4.6e-16 88.2 99 54.5
Ciclev10013717m.g Citrus clementina HOM05D008297 ORTHO05D010093 1.7e-15 86.3 118 49.2
TWI74G0146 Tripterygium wilfordii HOM05D008297 ORTHO05D010093 1.7e-15 86.3 93 48.4
Manes.09G056350 Manihot esculenta HOM05D008297 ORTHO05D010093 5.1e-15 84.7 64 67.2
Nn6g34936 Nelumbo nucifera HOM05D008297 ORTHO05D010093 5.1e-15 84.7 71 59.2
Gohir.A01G207000 Gossypium hirsutum HOM05D008297 ORTHO05D010093 1.5e-14 83.2 62 67.7
Gohir.D01G196400 Gossypium hirsutum HOM05D008297 ORTHO05D010093 2.5e-14 82.4 62 66.1
Gorai.002G240600 Gossypium raimondii HOM05D008297 ORTHO05D010093 2.5e-14 82.4 62 66.1
MSTRG.19253 Avicennia marina HOM05D008297 ORTHO05D010093 4.3e-14 81.6 57 70.2
Manes.08G024300 Manihot esculenta HOM05D008297 ORTHO05D010093 1.6e-13 79.7 52 73.1
Phvul.007G229200 Phaseolus vulgaris HOM05D008297 ORTHO05D010093 1.6e-13 79.7 86 54.7
MSTRG.5838 Avicennia marina HOM05D008297 ORTHO05D010093 2.1e-13 79.3 60 65.0
VMungo0720G0603 Vigna mungo HOM05D008297 ORTHO05D010093 3.6e-13 78.6 98 50.0
ECA233G2556 Erigeron canadensis HOM05D000444 ORTHO05D000489 6.2e-13 77.8 54 68.5
RcHm_v2.0_Chr3g0473001 Rosa chinensis HOM05D008297 ORTHO05D010093 8.1e-13 77.4 84 56.0
Nn5g28531 Nelumbo nucifera HOM05D008297 ORTHO05D010093 1.1e-12 77.0 56 69.6
Rhsim04G0131800 Rhododendron simsii HOM05D008297 ORTHO05D010093 1.8e-12 76.3 86 51.2
Ah.15g090940 Amaranthus hybridus HOM05D008297 ORTHO05D010093 3.1e-12 75.5 54 68.5
Actinidia31275 Actinidia chinensis HOM05D008297 ORTHO05D010093 1.2e-11 73.6 75 56.0
Oeu056894.1 Olea europaea HOM05D008297 ORTHO05D010093 2.6e-11 72.4 100 50.0
CiPaw.10G008800 Carya illinoinensis HOM05D008297 ORTHO05D010093 3.4e-11 72.0 80 52.5
Psat6g014040 Pisum sativum HOM05D008297 ORTHO05D010093 5.8e-11 71.2 110 44.5
EL10Ac7g16932 Beta vulgaris HOM05D008297 ORTHO05D010093 2.9e-10 68.9 54 61.1
AUR62033499 Chenopodium quinoa HOM05D008297 ORTHO05D010093 3.7e-10 68.6 67 53.7
Potri.004G142600 Populus trichocarpa HOM05D008297 ORTHO05D010093 4.9e-10 68.2 55 63.6
Lsat_1_v5_gn_6_24180 Lactuca sativa HOM05D008297 ORTHO05D010093 1.4e-09 66.6 84 45.2
AUR62028547 Chenopodium quinoa HOM05D008297 ORTHO05D010093 3.2e-09 65.5 67 52.2
TAR633G2623 Trochodendron aralioides HOM05D008297 ORTHO05D010093 4.1e-09 65.1 92 42.4
MBI17_g01565_MAGBIO Magnolia biondii HOM05D008297 ORTHO05D010093 2.1e-08 62.8 53 62.3
Migut.J01050 Erythranthe guttata HOM05D008297 ORTHO05D010093 4.6e-08 61.6 66 56.1
Eucgr.A01506 Eucalyptus grandis HOM05D008297 ORTHO05D010093 4.6e-08 61.6 107 42.1
Aqoxy6G02838 Aquilegia oxysepala HOM05D008297 ORTHO05D010093 1.0e-07 60.5 91 44.0
CsaV3_3G037180 Cucumis sativus L. HOM05D008297 ORTHO05D010093 2.3e-07 59.3 87 50.6
Sed0021862 Sechium edule HOM05D008297 ORTHO05D010093 6.6e-07 57.8 72 50.0
AL4G32400 Arabidopsis lyrata HOM05D012350 ORTHO05D010093 1.1e-06 57.0 65 52.3
arahy.Tifrunner.gnm1.ann1.MHCF32 Arachis hypogaea HOM05D057207 ORTHO05D010093 1.1e-06 57.0 99 40.4
arahy.Tifrunner.gnm1.ann1.SCUD5X Arachis hypogaea HOM05D057207 ORTHO05D010093 1.1e-06 57.0 99 40.4
Carub.0004s1804 Capsella rubella HOM05D012350 ORTHO05D010093 1.9e-06 56.2 67 49.3
Thhalv10017448m.g Eutrema salsugineum HOM05D012350 ORTHO05D010093 3.3e-06 55.5 59 54.2


User provided reference genes

Program Settings