Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 2178.7 1108 100.0
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1263.1 1132 61.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1248.0 1137 61.1
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1219.1 1139 60.0
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1217.2 1131 60.7
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1215.7 1138 59.6
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1212.6 1127 61.1
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1200.7 1132 59.3
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1187.6 1132 59.0
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1179.1 1135 59.3
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1178.7 1132 58.4
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1174.1 1131 59.1
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1173.3 1131 59.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1171.4 1131 58.5
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1160.2 1127 58.4
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1157.5 1128 58.9
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1146.7 1146 57.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1125.2 1115 57.2
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1122.5 1115 56.4
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 0.0e+00 1118.6 1114 57.4
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 0.0e+00 1118.2 1000 63.5
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 0.0e+00 1116.7 1139 57.0
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1115.1 1110 56.8
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 0.0e+00 1113.2 1113 56.7
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 0.0e+00 1103.6 1128 56.8
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 0.0e+00 1101.7 1129 55.3
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 0.0e+00 1091.6 1115 55.5
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1090.5 1127 55.5
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1087 57.0
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1085.9 1117 55.3
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 0.0e+00 1085.5 1114 56.0
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1080.9 1116 54.7
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 0.0e+00 1078.5 1147 54.5
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 0.0e+00 1077.0 1150 54.0
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 7.6e-312 1074.7 1123 56.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.4e-310 1068.1 1137 53.9
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.7e-309 1065.1 1000 60.1
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.1e-308 1063.5 1142 54.7
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 7.0e-308 1060.8 1148 53.7
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 3.3e-305 1052.0 1121 54.6
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 7.3e-305 1050.8 1134 53.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 2.0e-302 1042.7 1115 53.4
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 4.4e-302 1041.6 1108 54.6
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 5.7e-302 1041.2 1108 54.9
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 8.3e-301 1037.3 1141 52.1
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.8e-300 1036.2 958 61.1
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 9.2e-300 1033.9 1115 52.4
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.6e-299 1033.1 1145 52.8
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 2.0e-299 1032.7 1122 52.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 3.5e-299 1031.9 1042 56.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.7e-298 1029.6 1141 52.4
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.9e-297 1026.2 1138 53.1
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 6.8e-295 1017.7 1107 52.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.7e-293 1013.1 1128 51.3
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 2.4e-292 1009.2 1139 52.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 7.0e-292 1007.7 1124 53.5
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.6e-291 1006.5 1131 51.1
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.7e-291 1005.7 967 59.2
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 7.8e-291 1004.2 982 57.2
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 5.2e-287 991.5 1201 48.2
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 4.4e-286 988.4 1128 51.7
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.1e-283 979.5 1112 52.7
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 3.0e-282 975.7 879 62.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.0e-282 975.7 1147 50.6
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.1e-280 969.5 1125 51.0
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 6.8e-279 964.5 1200 48.2
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.5e-278 963.4 1138 51.5
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.4e-276 954.9 1130 51.1
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 3.9e-274 948.7 1148 49.7
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.5e-273 946.8 1124 49.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.4e-271 939.5 1112 48.9
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 7.1e-268 927.9 1108 48.6
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 9.3e-268 927.5 1151 48.4
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.0e-266 924.1 1109 48.1
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.1e-264 916.4 1119 47.7
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 1.1e-263 914.1 1117 48.3
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.4e-263 913.7 1104 50.7
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.1e-263 912.5 1107 48.9
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 5.3e-263 911.8 1117 48.2
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 6.9e-263 911.4 1164 48.7
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.2e-262 910.6 1126 49.4
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.5e-262 910.2 1162 48.0
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 3.4e-262 909.1 1118 47.6
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 7.6e-262 907.9 1117 48.4
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.7e-261 906.7 1122 47.9
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.9e-261 906.0 1126 49.1
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 4.2e-260 902.1 1111 48.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 9.3e-260 901.0 1095 47.6
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 6.0e-259 898.3 1110 48.1
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 4.3e-257 892.1 1116 47.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 3.6e-256 889.0 1113 48.3
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 8.1e-256 887.9 1109 47.5
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.0e-255 885.6 1111 47.5
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 9.0e-255 884.4 1142 46.9
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.5e-254 883.6 1034 49.2
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 5.8e-254 881.7 1115 47.5
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 7.6e-254 881.3 1111 47.3
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 7.6e-254 881.3 1111 47.3
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.7e-253 880.2 1118 47.0
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 8.4e-253 877.9 1111 47.1
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.2e-252 875.9 1118 47.2
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.6e-251 873.6 1144 46.6
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 5.1e-250 868.6 1121 47.3
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 3.4e-246 855.9 708 65.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 9.3e-244 847.8 696 64.8
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.1e-240 836.6 696 64.2
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 9.0e-239 831.2 898 54.0
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.4e-238 829.3 700 64.1
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.9e-228 797.0 1122 43.7
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.5e-228 796.6 1132 43.1
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 7.9e-227 791.6 811 55.5
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.7e-224 783.9 784 56.6
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 8.8e-218 761.5 554 72.7
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 4.4e-217 759.2 1135 42.4
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.6e-214 750.7 863 52.4
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 4.2e-212 742.7 886 50.0
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 3.6e-211 739.6 660 61.8
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 5.3e-207 725.7 955 48.8
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 1.2e-206 724.5 957 47.6
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 5.7e-201 705.7 856 48.2
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 9.1e-199 698.4 640 61.6
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 5.9e-198 695.7 541 66.2
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 6.6e-189 665.6 452 73.5
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 7.3e-180 635.6 1122 39.2
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.2e-177 628.2 652 55.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.7e-163 579.7 909 42.8
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 4.5e-129 466.8 731 44.9
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.0e-128 465.7 268 87.7
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.0e-128 465.7 268 87.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 3.5e-126 457.2 754 39.0
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 7.4e-124 449.5 803 38.2
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-114 419.1 408 56.1
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-111 409.1 608 43.3
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.2e-111 407.5 599 43.2
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.1e-103 382.5 328 59.5
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.9e-96 357.8 205 87.8
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 4.8e-83 313.9 638 37.0
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 9.5e-63 246.5 685 32.4
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 6.2e-62 243.8 221 56.1
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 6.4e-59 233.8 782 29.7
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-54 219.5 142 79.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.2e-41 176.4 157 62.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 8.7e-40 170.2 131 64.1
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 3.6e-38 164.9 91 89.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.9e-34 152.5 157 58.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.3e-32 145.6 91 74.7
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 9.6e-31 140.2 169 43.8
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.5e-23 116.3 368 30.2
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 1.3e-19 103.2 66 72.7
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 8.7e-16 90.5 383 26.6
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 3.4e-12 78.6 129 36.4
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 9.3e-10 70.5 208 29.8
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 7.9e-09 67.4 130 34.6
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 2.3e-08 65.9 112 37.5
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 3.0e-08 65.5 110 37.3
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.5e-07 62.4 162 31.5
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 4.8e-06 58.2 111 33.3


User provided reference genes

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