Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2510 Cannabis sativa HOM05D007596 ORTHO05D009672 2.0e-152 542.3 260 100.0
CiPaw.11G029100 Carya illinoinensis HOM05D007596 ORTHO05D009672 3.1e-121 438.7 260 77.7
Thecc.03G008700 Theobroma cacao HOM05D007596 ORTHO05D009672 3.7e-119 431.8 262 76.0
GSVIVG01007788001 Vitis vinifera HOM05D007596 ORTHO05D009672 7.1e-118 427.6 263 74.5
Duzib205G0154 Durio zibethinus HOM05D007596 ORTHO05D009672 3.5e-117 425.2 262 74.4
TWI15G1048 Tripterygium wilfordii HOM05D007596 ORTHO05D009672 6.6e-116 421.0 262 73.7
Eucgr.K02859 Eucalyptus grandis HOM05D007596 ORTHO05D009672 4.3e-115 418.3 268 73.9
ClCG01G013000 Citrullus lanatus HOM05D007596 ORTHO05D009672 4.7e-114 414.8 260 72.3
Sed0010804 Sechium edule HOM05D007596 ORTHO05D009672 1.4e-113 413.3 260 72.7
Potri.012G078600 Populus trichocarpa HOM05D007596 ORTHO05D009672 2.3e-113 412.5 263 72.2
Ciclev10021737m.g Citrus clementina HOM05D007596 ORTHO05D009672 2.0e-112 409.5 259 72.2
CsaV3_1G008350 Cucumis sativus L. HOM05D007596 ORTHO05D009672 2.6e-112 409.1 260 71.5
MD06G1177600 Malus domestica HOM05D007596 ORTHO05D009672 1.7e-111 406.4 258 73.3
Manes.06G103100 Manihot esculenta HOM05D007596 ORTHO05D009672 8.4e-111 404.1 263 70.7
PGR044G0668 Punica granatum HOM05D007596 ORTHO05D009672 1.2e-109 400.2 266 72.2
FAN13G0067 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.1e-109 399.4 262 71.8
TAR374G1438 Trochodendron aralioides HOM05D007596 ORTHO05D009672 2.7e-109 399.1 264 69.3
Lj9A451T97 Lonicera japonica HOM05D007596 ORTHO05D009672 3.5e-109 398.7 264 69.3
Gohir.A09G169500 Gossypium hirsutum HOM05D007596 ORTHO05D009672 4.6e-109 398.3 262 71.0
Gorai.006G187000 Gossypium raimondii HOM05D007596 ORTHO05D009672 4.6e-109 398.3 262 71.0
FAN08G2413 Fragaria x ananassa HOM05D007596 ORTHO05D009672 7.8e-109 397.5 262 71.4
Rhsim12G0163300 Rhododendron simsii HOM05D007596 ORTHO05D009672 1.7e-108 396.4 264 67.0
FAN18G0106 Fragaria x ananassa HOM05D007596 ORTHO05D009672 2.3e-108 396.0 262 71.4
Atru.chr9.2439 Acer truncatum HOM05D007596 ORTHO05D009672 3.0e-108 395.6 258 71.7
FvH4_5g05110 Fragaria vesca HOM05D007596 ORTHO05D009672 3.0e-108 395.6 262 71.0
RcHm_v2.0_Chr7g0193891 Rosa chinensis HOM05D007596 ORTHO05D009672 3.0e-108 395.6 262 71.4
Lj4g0018893 Lotus japonicus HOM05D007596 ORTHO05D009672 5.1e-108 394.8 263 69.6
CSS0015692 Camellia sinensis var. sinensis HOM05D007596 ORTHO05D009672 5.6e-107 391.3 264 68.2
Nn4g22825 Nelumbo nucifera HOM05D007596 ORTHO05D009672 5.6e-107 391.3 252 71.8
vmacro16599 Vaccinium macrocarpon HOM05D007596 ORTHO05D009672 9.6e-107 390.6 264 67.8
Psat4g056920 Pisum sativum HOM05D007596 ORTHO05D009672 1.2e-106 390.2 265 68.7
Sabra12G0056400 Salix brachista HOM05D007596 ORTHO05D009672 1.6e-106 389.8 305 62.0
PSO063G6591 Papaver somniferum HOM05D007596 ORTHO05D009672 2.8e-106 389.0 264 68.2
Hma1.2p1_0701F.1_g205970 Hydrangea macrophylla HOM05D007596 ORTHO05D009672 3.6e-106 388.7 258 70.9
EL10Ac5g10784 Beta vulgaris HOM05D007596 ORTHO05D009672 1.8e-105 386.3 261 67.8
Phvul.003G198900 Phaseolus vulgaris HOM05D007596 ORTHO05D009672 6.9e-105 384.4 263 68.1
MBI15_g31109_MAGBIO Magnolia biondii HOM05D007596 ORTHO05D009672 8.9e-105 384.0 263 68.4
SGA_v2.0_scaffold90G27960 Striga asiatica HOM05D007596 ORTHO05D009672 8.9e-105 384.0 264 66.7
Hund02735 Selenicereus undatus HOM05D007596 ORTHO05D009672 1.2e-104 383.6 259 68.7
Lalb_Chr13g0297881 Lupinus albus HOM05D007596 ORTHO05D009672 2.0e-104 382.9 263 66.9
Oeu041561.1 Olea europaea HOM05D007596 ORTHO05D009672 2.0e-104 382.9 264 67.0
DCAR_026124 Daucus carota HOM05D007596 ORTHO05D009672 3.4e-104 382.1 254 68.1
Nitab4.5_0000003g0490 Nicotiana tabacum HOM05D007596 ORTHO05D009672 3.4e-104 382.1 262 67.6
ECA232G2922 Erigeron canadensis HOM05D007596 ORTHO05D009672 1.3e-103 380.2 262 66.8
Nitab4.5_0007803g0020 Nicotiana tabacum HOM05D007596 ORTHO05D009672 1.7e-103 379.8 262 67.6
Sopen06g027660 Solanum pennellii HOM05D007596 ORTHO05D009672 2.9e-103 379.0 262 67.6
PGSC0003DMG400027097 Solanum tuberosum HOM05D007596 ORTHO05D009672 2.9e-103 379.0 253 68.4
arahy.Tifrunner.gnm1.ann1.8F9XT7 Arachis hypogaea HOM05D007596 ORTHO05D009672 8.4e-103 377.5 263 67.3
Solyc06g071380.3 Solanum lycopersicum HOM05D007596 ORTHO05D009672 1.1e-102 377.1 262 67.6
HanXRQChr16g0503661 Helianthus annuus HOM05D007596 ORTHO05D009672 3.2e-102 375.6 262 67.6
Migut.I00032 Erythranthe guttata HOM05D007596 ORTHO05D009672 4.2e-102 375.2 266 69.2
Aqoxy3G00967 Aquilegia oxysepala HOM05D007596 ORTHO05D009672 5.4e-102 374.8 253 68.4
arahy.Tifrunner.gnm1.ann1.3E9X4W Arachis hypogaea HOM05D007596 ORTHO05D009672 5.4e-102 374.8 263 67.3
Cc04_g12800 Coffea canephora HOM05D007596 ORTHO05D009672 1.2e-101 373.6 264 65.5
Glyma.05G036200 Glycine max HOM05D007596 ORTHO05D009672 1.2e-101 373.6 263 65.8
COL.COLO4_34057 Corchorus olitorius HOM05D007596 ORTHO05D009672 1.6e-101 373.2 266 68.4
FAN18G0038 Fragaria x ananassa HOM05D007596 ORTHO05D009672 3.5e-101 372.1 254 69.3
Medtr4g106630 Medicago truncatula HOM05D007596 ORTHO05D009672 3.0e-100 369.0 260 66.5
MSTRG.11436 Avicennia marina HOM05D007596 ORTHO05D009672 8.7e-100 367.5 264 65.9
SalBow5G3112 Salvia bowleyana HOM05D007596 ORTHO05D009672 2.5e-99 365.9 263 66.5
Dinv20674 Davidia involucrata HOM05D007596 ORTHO05D009672 1.4e-97 360.1 219 74.9
TPR.G37562 Trifolium pratense HOM05D007596 ORTHO05D009672 1.8e-97 359.8 264 64.8
Cfa019092 Carpinus fangiana HOM05D007596 ORTHO05D009672 9.0e-97 357.5 217 75.6
HPP92_019181 Vanilla planifolia HOM05D007596 ORTHO05D009672 1.3e-95 353.6 265 63.4
PSO832G1789 Papaver somniferum HOM05D007596 ORTHO05D009672 6.0e-93 344.7 225 70.2
Psat4g101560 Pisum sativum HOM05D007596 ORTHO05D009672 2.5e-91 339.3 253 64.4
Gohir.D09G165200 Gossypium hirsutum HOM05D007596 ORTHO05D009672 1.1e-89 334.0 262 62.2
Peaxi162Scf00689g00036 Petunia axillaris HOM05D007596 ORTHO05D009672 6.4e-87 324.7 262 61.1
Lsat_1_v5_gn_4_73100 Lactuca sativa HOM05D007596 ORTHO05D009672 1.2e-85 320.5 262 59.5
ATR0691G114 Amborella trichopoda HOM05D007596 ORTHO05D009672 9.6e-83 310.8 217 64.1
VMungo1215G2651 Vigna mungo HOM05D007596 ORTHO05D009672 5.3e-81 305.1 263 57.4
Zm00001eb080350 Zea mays HOM05D007596 ORTHO05D009672 1.9e-78 296.6 224 61.6
Prupe.5G176300 Prunus persica HOM05D007596 ORTHO05D009672 1.3e-76 290.4 176 76.1
Os04g0465800 Oryza sativa ssp. japonica HOM05D007596 ORTHO05D009672 3.7e-74 282.3 228 58.8
Sc04g0001910 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.4e-70 270.4 179 69.3
Ca_21906_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 2.2e-66 256.5 207 61.4
Ca_21924_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 2.2e-66 256.5 207 61.4
QL10p012241 Quercus lobata HOM05D007596 ORTHO05D009672 1.4e-57 227.3 132 78.8
SMO347G0014 Selaginella moellendorffii HOM05D007596 ORTHO05D009672 2.9e-55 219.5 179 58.1
CiPaw.11G029000 Carya illinoinensis HOM05D007596 ORTHO05D009672 1.9e-54 216.9 128 75.0
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 6.3e-50 201.8 181 54.7
Glyma.17G091200 Glycine max HOM05D007596 ORTHO05D009672 6.3e-50 201.8 201 49.8
Haze_07490 Corylus avellana HOM05D007596 ORTHO05D009672 2.2e-47 193.4 131 71.8
SGA_v2.0_scaffold90G27962 Striga asiatica HOM05D007596 ORTHO05D009672 2.2e-47 193.4 161 57.1
unitig_26.g8797 Utricularia gibba HOM05D007596 ORTHO05D009672 8.5e-47 191.4 282 41.5
CBR_g18641 Chara braunii HOM05D007596 ORTHO05D009672 8.5e-39 164.9 143 52.4
FAN04G0664 Fragaria x ananassa HOM05D007596 ORTHO05D009672 8.5e-39 164.9 118 68.6
COL.COLO4_33480 Corchorus olitorius HOM05D007596 ORTHO05D009672 6.1e-37 158.7 106 71.7
AUR62030990 Chenopodium quinoa HOM05D007596 ORTHO05D009672 3.4e-35 152.9 100 68.0
Cpa.g.c40406 Carica papaya HOM05D007596 ORTHO05D009672 7.2e-30 135.2 96 67.7
FvH4_5g16630 Fragaria vesca HOM05D007596 ORTHO05D009672 1.2e-29 134.4 315 31.1
FAN18G2080 Fragaria x ananassa HOM05D007596 ORTHO05D009672 3.6e-29 132.9 315 31.1
SGA_v2.0_scaffold90G27974 Striga asiatica HOM05D001155 ORTHO05D001080 1.1e-17 94.7 92 51.1
Sc11g0005570 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.4e-17 94.4 58 67.2
SGA_v2.0_scaffold90G27967 Striga asiatica HOM05D007596 ORTHO05D009672 3.2e-17 93.2 75 58.7
Sc11g0005890 Simmondsia chinensis HOM05D007596 ORTHO05D009672 7.0e-17 92.0 58 65.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.5e-14 84.3 113 42.5


User provided reference genes

Program Settings