Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 0.0e+00 1156.7 652 100.0
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 5.1e-298 1027.3 652 91.4
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.1e-47 195.7 298 43.6
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 4.0e-45 187.2 347 38.6
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 3.4e-44 184.1 345 40.6
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 5.8e-44 183.3 289 43.6
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 2.2e-43 181.4 299 41.8
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.9e-43 181.0 338 39.9
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 2.1e-41 174.9 203 48.8
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 6.0e-41 173.3 254 42.1
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 6.0e-41 173.3 281 40.6
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 1.8e-40 171.8 274 41.6
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 8.7e-40 169.5 334 37.1
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 8.7e-40 169.5 246 41.9
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 2.1e-38 164.9 286 39.5
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 4.5e-36 157.1 217 41.0
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 1.3e-35 155.6 191 48.2
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.4e-34 152.1 131 54.2
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 4.2e-34 150.6 131 54.2
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 7.1e-34 149.8 135 53.3
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 9.3e-34 149.4 246 40.2
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 1.2e-33 149.1 156 51.9
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.2e-33 149.1 131 52.7
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 6.7e-32 143.3 209 43.5
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 1.9e-31 141.7 303 33.3
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.5e-31 141.4 116 59.5
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 2.5e-31 141.4 254 37.4
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.6e-31 140.2 247 37.7
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 7.4e-31 139.8 170 45.9
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 2.1e-30 138.3 215 40.5
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 2.1e-30 138.3 309 33.0
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.8e-29 135.2 362 32.6
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 5.3e-29 133.7 164 43.9
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 9.0e-29 132.9 774 25.8
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 5.8e-28 130.2 217 36.9
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 1.0e-27 129.4 164 42.7
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 1.3e-27 129.0 188 45.2
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 1.7e-27 128.6 668 25.3
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.7e-27 128.6 693 24.8
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 2.2e-27 128.3 198 39.9
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 2.9e-27 127.9 186 44.6
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 2.9e-27 127.9 709 26.1
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 9.3e-26 122.9 283 34.6
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 9.3e-26 122.9 258 38.4
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 1.2e-25 122.5 136 47.8
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 1.6e-25 122.1 112 53.6
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.0e-24 119.4 116 50.9
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.3e-24 118.2 215 40.5
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 1.5e-23 115.5 139 51.1
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 2.1e-22 111.7 273 33.0
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 2.8e-22 111.3 164 39.0
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 3.7e-22 110.9 98 56.1
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 4.8e-22 110.5 158 41.1
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 2.4e-21 108.2 214 34.1
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 6.5e-19 100.1 181 38.7
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.4e-18 99.0 136 42.6
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.5e-18 98.2 144 41.7
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 3.2e-18 97.8 208 35.1
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 9.3e-18 96.3 238 32.8
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 2.1e-17 95.1 240 29.6
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 1.0e-16 92.8 145 38.6
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 6.7e-16 90.1 141 42.6
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 6.7e-16 90.1 184 33.7
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 8.7e-16 89.7 119 43.7
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 3.3e-15 87.8 209 31.6
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 3.3e-15 87.8 137 40.9
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 5.7e-15 87.0 129 40.3
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 1.3e-14 85.9 130 36.9
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.6e-14 85.5 227 30.8
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 3.7e-14 84.3 280 31.4
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 8.2e-14 83.2 193 33.7
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 1.1e-13 82.8 166 33.7
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 1.4e-13 82.4 284 27.5
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 5.3e-13 80.5 141 41.1
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 5.3e-13 80.5 254 30.3
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 7.7e-12 76.6 211 29.4
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 3.8e-11 74.3 165 32.7
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 1.9e-10 72.0 190 32.1
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 4.2e-10 70.9 165 31.5
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 7.2e-10 70.1 194 31.4
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 1.6e-09 68.9 186 30.1
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 2.7e-09 68.2 61 50.8
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 3.6e-09 67.8 188 29.3
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 2.6e-07 61.6 197 32.0
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 1.3e-06 59.3 99 38.4
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 2.8e-06 58.2 111 33.3
Sopen10g030520 Solanum pennellii HOM05D029882 ORTHO05D037717 2.8e-06 58.2 77 40.3


User provided reference genes

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