Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 1.3e-45 186.4 121 100.0
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 2.2e-21 105.9 65 78.5
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 2.4e-20 102.4 65 73.8
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 5.4e-20 101.3 69 76.8
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 7.0e-20 100.9 66 68.2
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 7.0e-20 100.9 67 73.1
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 7.8e-19 97.4 67 73.1
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 7.8e-19 97.4 61 78.7
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 1.0e-18 97.1 67 70.1
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 6.6e-18 94.4 67 68.7
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 8.6e-18 94.0 67 68.7
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.1e-17 93.6 61 72.1
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 1.5e-17 93.2 65 70.8
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 1.5e-17 93.2 66 66.7
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.9e-17 92.8 66 66.7
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 3.3e-17 92.0 66 65.2
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 3.3e-17 92.0 65 67.7
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 4.3e-17 91.7 67 67.2
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 5.6e-17 91.3 60 70.0
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 7.3e-17 90.9 65 69.2
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 7.3e-17 90.9 64 70.3
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 1.2e-16 90.1 65 70.8
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.6e-16 89.7 66 65.2
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 3.6e-16 88.6 63 68.3
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.1e-15 87.0 67 64.2
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 1.1e-15 87.0 59 71.2
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 1.4e-15 86.7 65 63.1
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 1.8e-15 86.3 65 66.2
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 1.8e-15 86.3 58 72.4
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 1.8e-15 86.3 58 72.4
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 3.1e-15 85.5 67 61.2
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 4.0e-15 85.1 67 62.7
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 4.0e-15 85.1 67 62.7
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 4.0e-15 85.1 67 67.2
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 4.0e-15 85.1 59 69.5
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 4.0e-15 85.1 59 71.2
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 5.2e-15 84.7 65 64.6
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 5.2e-15 84.7 65 64.6
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 5.2e-15 84.7 59 69.5
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 5.2e-15 84.7 59 67.8
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 6.8e-15 84.3 66 65.2
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 6.8e-15 84.3 60 68.3
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 6.8e-15 84.3 65 64.6
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 6.8e-15 84.3 135 40.0
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 8.9e-15 84.0 151 39.7
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 8.9e-15 84.0 74 59.5
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 8.9e-15 84.0 65 64.6
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 8.9e-15 84.0 68 61.8
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 1.2e-14 83.6 65 64.6
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 2.6e-14 82.4 151 39.1
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 2.6e-14 82.4 151 39.1
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 4.4e-14 81.6 59 64.4
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 5.8e-14 81.3 64 59.4
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 5.8e-14 81.3 61 65.6
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 5.8e-14 81.3 151 38.4
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 5.8e-14 81.3 65 61.5
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 5.8e-14 81.3 59 64.4
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 5.8e-14 81.3 59 69.5
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 5.8e-14 81.3 68 60.3
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 7.5e-14 80.9 59 67.8
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 7.5e-14 80.9 65 61.5
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 9.8e-14 80.5 59 66.1
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 1.3e-13 80.1 64 62.5
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 1.3e-13 80.1 161 37.9
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 1.3e-13 80.1 59 66.1
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.7e-13 79.7 68 64.7
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 1.7e-13 79.7 59 66.1
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 2.2e-13 79.3 63 63.5
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 2.9e-13 79.0 151 38.4
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 2.9e-13 79.0 57 66.7
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 3.7e-13 78.6 66 57.6
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 6.4e-13 77.8 67 61.2
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 8.3e-13 77.4 59 66.1
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 1.9e-12 76.3 67 62.7
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 1.9e-12 76.3 62 58.1
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 2.4e-12 75.9 62 58.1
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 4.1e-12 75.1 50 72.0
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 1.2e-11 73.6 66 62.1
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 2.1e-11 72.8 59 61.0
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 2.1e-11 72.8 59 61.0
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 2.1e-11 72.8 57 61.4
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 2.7e-11 72.4 64 56.2
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 2.7e-11 72.4 59 66.1
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 6.0e-11 71.2 59 62.7
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 1.3e-10 70.1 65 53.8
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 2.3e-10 69.3 48 68.8
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 3.0e-10 68.9 60 58.3
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 3.9e-10 68.6 50 64.0
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 6.6e-10 67.8 63 55.6
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 8.6e-10 67.4 43 74.4
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.9e-09 66.2 148 35.8
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 5.6e-09 64.7 59 54.2
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 7.3e-09 64.3 52 57.7
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 9.5e-09 63.9 47 68.1
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 6.2e-08 61.2 40 72.5
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 6.2e-08 61.2 45 62.2
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 8.1e-08 60.8 101 38.6
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.4e-07 60.1 64 50.0
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.4e-07 60.1 44 61.4
Zm00001eb141670 Zea mays HOM05D007065 ORTHO05D008960 1.8e-07 59.7 62 51.6
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 2.3e-07 59.3 44 61.4
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 2.3e-07 59.3 62 51.6
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 2.3e-07 59.3 44 65.9
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 6.8e-07 57.8 54 53.7
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 8.9e-07 57.4 51 56.9
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.2e-06 57.0 44 65.9
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 2.6e-06 55.8 43 62.8
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 7.6e-06 54.3 44 56.8


User provided reference genes

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