Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.6e-58 228.4 109 100.0
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 4.1e-51 204.5 109 89.0
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.0e-50 202.2 109 87.2
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 2.6e-50 201.8 109 87.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 5.9e-50 200.7 109 86.2
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.0e-49 199.9 109 86.2
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.3e-49 199.5 109 87.2
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.7e-49 199.1 109 86.2
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 5.5e-48 194.1 109 86.2
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 2.1e-47 192.2 101 88.1
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.7e-47 191.8 101 88.1
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.8e-46 189.1 106 84.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.8e-46 189.1 107 82.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.3e-46 188.7 109 82.6
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 3.0e-46 188.3 106 81.1
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 3.9e-46 188.0 110 83.6
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 8.8e-46 186.8 99 86.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.1e-45 186.4 109 80.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.1e-45 186.4 106 80.2
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.5e-45 186.0 110 84.5
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.5e-45 186.0 99 86.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.0e-45 185.7 97 87.6
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.0e-45 185.7 106 83.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 4.4e-45 184.5 110 84.5
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 7.4e-45 183.7 99 85.9
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.3e-44 183.0 107 79.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.2e-44 182.2 94 88.3
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 8.2e-44 180.3 105 78.1
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.1e-43 178.3 109 78.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.1e-43 178.3 109 78.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 3.1e-43 178.3 105 78.1
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 9.1e-43 176.8 95 84.2
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.6e-42 176.0 94 86.2
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-42 176.0 110 78.2
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 1.6e-42 176.0 110 78.2
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.0e-42 175.6 99 79.8
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 2.0e-42 175.6 105 76.2
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.6e-42 175.3 109 76.1
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 3.5e-42 174.9 94 84.0
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 4.5e-42 174.5 97 80.4
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 5.9e-42 174.1 104 76.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 5.9e-42 174.1 106 78.3
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 5.9e-42 174.1 111 78.4
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.0e-41 173.3 106 76.4
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 1.0e-41 173.3 108 74.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.3e-41 172.9 104 76.9
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 1.7e-41 172.6 108 75.9
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.2e-41 172.2 110 79.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 2.9e-41 171.8 88 89.8
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 3.8e-41 171.4 106 75.5
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 6.5e-41 170.6 94 80.9
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.5e-41 170.6 108 77.8
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 6.5e-41 170.6 108 73.1
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 8.5e-41 170.2 108 76.9
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 8.5e-41 170.2 108 76.9
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.1e-40 169.9 97 78.4
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.5e-40 169.5 96 81.2
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.9e-40 169.1 105 78.1
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.9e-40 169.1 109 71.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 3.2e-40 168.3 96 78.1
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.2e-40 167.9 105 75.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 7.2e-40 167.2 94 80.9
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.2e-40 167.2 97 79.4
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 7.2e-40 167.2 109 71.6
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 1.2e-39 166.4 97 79.4
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.2e-39 166.4 95 81.1
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.6e-39 166.0 105 74.3
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.6e-39 166.0 96 78.1
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 2.1e-39 165.6 109 74.3
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 2.7e-39 165.2 108 76.9
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 3.6e-39 164.9 104 72.1
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.6e-39 164.9 108 73.1
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 3.6e-39 164.9 109 74.3
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.7e-39 164.5 104 75.0
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-39 164.1 97 77.3
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.0e-38 163.3 92 80.4
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.0e-38 163.3 106 72.6
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.0e-38 163.3 109 74.3
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 1.0e-38 163.3 95 78.9
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.4e-38 162.9 97 76.3
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.4e-38 162.9 97 76.3
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.4e-38 162.9 108 73.1
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.4e-38 162.9 108 73.1
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.4e-38 162.9 108 73.1
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.8e-38 162.5 105 72.4
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.3e-38 162.2 96 77.1
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 2.3e-38 162.2 109 73.4
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.3e-38 162.2 85 84.7
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-38 161.8 108 72.2
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 77.1
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 3.0e-38 161.8 96 77.1
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.0e-38 161.8 97 73.2
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 4.0e-38 161.4 95 77.9
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.0e-38 161.4 92 80.4
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 4.0e-38 161.4 96 78.1
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 5.2e-38 161.0 96 78.1
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 6.7e-38 160.6 108 72.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.7e-38 160.6 109 74.3
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 6.7e-38 160.6 109 73.4
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.2e-37 159.8 103 71.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.2e-37 159.8 103 71.8
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.2e-37 159.8 109 74.3
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-37 159.5 108 72.2
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-37 159.5 96 76.0
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-37 159.5 96 76.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-37 159.5 96 76.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.5e-37 159.5 108 69.4
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.5e-37 159.5 108 70.4
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.0e-37 159.1 96 77.1
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.0e-37 159.1 105 70.5
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.0e-37 159.1 109 73.4
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.0e-37 159.1 111 68.5
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.6e-37 158.7 103 71.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.3e-37 158.3 109 73.4
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.3e-37 158.3 106 69.8
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 5.7e-37 157.5 104 72.1
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.7e-37 157.5 109 74.3
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 5.7e-37 157.5 91 81.3
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 5.7e-37 157.5 96 74.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 95 76.8
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 75.0
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 75.0
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 75.0
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 75.0
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.7e-36 156.0 96 75.0
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 1.7e-36 156.0 94 76.6
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 2.8e-36 155.2 104 70.2
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 4.8e-36 154.5 94 75.5
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 4.8e-36 154.5 94 75.5
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 6.3e-36 154.1 104 69.2
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.4e-35 152.1 95 74.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 4.1e-35 151.4 85 81.2
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 9.1e-35 150.2 109 71.6
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 9.1e-35 150.2 94 77.7
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.6e-34 149.4 84 79.8
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 4.5e-34 147.9 82 81.7
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.2e-33 145.6 103 68.9
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 8.5e-33 143.7 93 72.0
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.1e-31 137.5 104 63.5
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 6.8e-30 134.0 104 62.5
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.4e-29 131.3 111 62.2
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 7.7e-26 120.6 99 60.6
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 3.8e-25 118.2 57 91.2
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 5.2e-22 107.8 61 83.6
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 7.5e-21 104.0 98 52.0
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 2.2e-20 102.4 85 60.0
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 6.3e-20 100.9 95 53.7
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 9.2e-19 97.1 61 78.7
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 7.8e-18 94.0 83 54.2
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.9e-17 92.0 53 79.2
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 1.9e-16 89.4 61 63.9
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 4.7e-15 84.7 73 52.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.6e-13 79.0 72 61.1
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 7.0e-11 70.9 64 51.6
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 6.6e-09 64.3 44 65.9
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.1e-07 59.3 109 41.3
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.1e-07 59.3 42 71.4


User provided reference genes

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