Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 0.0e+00 2026.9 1007 100.0
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 0.0e+00 1157.5 1014 57.7
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1154.0 1014 58.0
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1147.1 1011 56.5
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 0.0e+00 1137.9 1015 56.7
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1137.1 1047 54.8
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 0.0e+00 1131.7 1014 57.6
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 0.0e+00 1112.8 1012 57.0
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1108.2 979 56.7
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 0.0e+00 1099.0 1002 55.0
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 0.0e+00 1090.9 1020 53.6
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 0.0e+00 1086.2 1020 54.5
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 1.4e-311 1073.2 1005 54.1
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 2.0e-301 1039.3 1028 52.6
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 1.6e-295 1019.6 1016 52.1
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 2.8e-295 1018.8 1015 52.1
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 8.1e-295 1017.3 978 53.9
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 2.0e-293 1012.7 1010 51.3
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 1.1e-291 1006.9 1014 52.6
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 4.3e-288 995.0 978 53.2
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.2e-287 993.4 1021 51.4
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 7.6e-285 984.2 1017 49.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 5.4e-283 978.0 898 56.7
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 7.3e-280 967.6 998 48.3
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 4.8e-279 964.9 1019 49.1
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 6.2e-279 964.5 1013 48.7
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 6.2e-279 964.5 1017 49.0
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 2.9e-276 955.7 1014 48.6
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 1.3e-273 946.8 1008 48.7
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 1.8e-273 946.4 999 48.9
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 5.1e-273 944.9 1009 49.1
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 9.6e-272 940.6 1012 47.9
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 6.9e-270 934.5 1015 47.7
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 2.2e-268 929.5 1017 48.5
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 2.9e-268 929.1 1010 48.1
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 4.2e-267 925.2 1000 47.6
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 2.8e-263 912.5 1018 47.2
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 2.9e-260 902.5 838 53.5
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 4.6e-258 895.2 1017 46.3
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 6.0e-258 894.8 1018 47.0
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.0e-257 894.0 1011 45.6
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 6.7e-257 891.3 1020 46.7
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 1.5e-256 890.2 1010 45.5
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 3.3e-256 889.0 1010 45.8
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 3.3e-256 889.0 1009 49.0
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 9.7e-256 887.5 1009 45.6
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.8e-254 883.2 1023 46.2
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 4.5e-253 878.6 1023 46.4
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 2.9e-252 875.9 926 49.4
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 5.0e-252 875.2 1017 45.7
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 9.3e-251 870.9 1009 45.8
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 1.2e-250 870.5 922 48.6
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 9.7e-248 860.9 1011 45.5
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 1.3e-247 860.5 1011 45.4
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 3.4e-245 852.4 984 45.8
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 5.9e-245 851.7 1000 44.9
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.3e-244 850.5 1012 46.4
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 3.8e-244 849.0 1026 45.3
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 6.1e-242 841.6 1002 45.0
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 4.8e-239 832.0 1019 44.6
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 2.6e-237 826.2 1133 42.8
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 9.4e-235 817.8 748 53.2
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 2.3e-233 813.1 941 45.0
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 2.0e-229 800.0 1024 43.3
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 3.5e-229 799.3 1014 44.1
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 3.2e-227 792.7 994 42.9
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 7.2e-227 791.6 1003 42.5
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.8e-220 769.2 928 46.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 4.2e-219 765.8 825 49.3
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 4.7e-218 762.3 993 42.8
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 4.0e-217 759.2 1008 41.5
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 1.5e-211 740.7 1008 41.9
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 1.0e-204 718.0 1006 40.5
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 2.1e-202 710.3 885 44.2
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 6.8e-201 705.3 747 47.0
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 1.1e-198 698.0 749 48.6
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 4.6e-197 692.6 1010 39.3
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 6.0e-197 692.2 1016 40.6
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 8.9e-193 678.3 828 44.3
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 7.5e-192 675.2 832 44.4
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 3.6e-186 656.4 858 42.5
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 4.9e-183 646.0 1078 38.5
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 3.6e-178 629.8 712 44.2
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 5.8e-176 622.5 725 43.4
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 4.6e-173 612.8 797 43.2
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.0e-156 557.0 579 49.9
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 5.1e-156 556.2 1036 33.8
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 7.4e-147 525.8 580 47.8
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.0e-127 462.2 428 52.6
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.1e-121 442.2 882 33.6
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 8.0e-117 426.0 751 35.8
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.7e-109 401.0 369 56.9
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.2e-104 385.6 438 46.3
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.4e-100 372.1 502 46.6
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 5.6e-86 323.6 971 27.5
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 7.5e-83 313.2 1069 25.7
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 1.3e-82 312.4 989 26.5
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 8.6e-71 273.1 195 60.5
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.6e-64 250.8 515 34.2
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 5.1e-63 247.3 193 59.1
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 4.7e-61 240.7 326 36.8
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 3.1e-60 238.0 244 52.0
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 3.2e-57 228.0 277 45.5
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 8.7e-55 219.9 145 70.3
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 5.3e-52 210.7 240 48.3
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 9.9e-51 206.5 428 33.2
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 1.9e-46 192.2 443 31.4
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 5.6e-46 190.7 138 63.0
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 2.8e-45 188.3 143 60.1
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.4e-44 186.0 193 52.8
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 2.6e-43 181.8 238 41.2
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.2e-40 172.9 171 52.6
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 8.1e-37 160.2 151 48.3
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 9.6e-30 136.7 125 54.4
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 1.5e-27 129.4 148 48.0
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 3.4e-27 128.3 148 48.0
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 7.6e-27 127.1 257 30.7
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 1.7e-26 125.9 76 68.4
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 1.9e-22 112.5 155 39.4
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 1.0e-15 90.1 96 44.8
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 1.5e-14 86.3 168 33.9
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 8.2e-13 80.5 92 45.7
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 9.1e-12 77.0 155 32.3
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 1.0e-10 73.6 126 36.5
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 2.9e-10 72.0 47 59.6
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 5.7e-06 57.8 54 55.6


User provided reference genes

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