Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 0.0e+00 1190.6 644 100.0
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.1e-268 929.9 624 80.6
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 8.9e-263 910.2 636 75.0
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 1.1e-260 903.3 624 77.6
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 1.2e-259 899.8 629 77.6
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 7.8e-259 897.1 667 71.8
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 1.2e-251 873.2 621 76.3
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 6.0e-251 870.9 629 75.5
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.0e-250 870.2 629 75.2
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.7e-250 869.4 627 76.2
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 6.6e-250 867.5 629 75.0
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.6e-248 861.7 627 75.0
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.6e-248 861.7 623 77.5
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 6.8e-247 857.4 629 70.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.4e-246 854.7 636 73.6
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.7e-245 852.8 614 77.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 6.4e-245 850.9 612 78.1
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 8.4e-245 850.5 625 69.8
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 8.4e-245 850.5 620 71.1
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 7.1e-244 847.4 642 73.4
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.6e-243 846.3 631 71.9
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 2.7e-243 845.5 624 76.6
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 3.5e-243 845.1 612 71.4
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 3.5e-243 845.1 612 71.4
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.8e-243 844.0 620 70.3
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.1e-242 841.3 618 75.7
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.1e-241 840.1 630 67.6
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 7.3e-241 837.4 631 74.3
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 7.3e-241 837.4 640 72.3
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 2.8e-240 835.5 629 70.0
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 3.1e-239 832.0 595 72.3
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.1e-239 832.0 631 70.5
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 6.9e-239 830.9 631 70.0
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 3.4e-238 828.6 623 69.8
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 2.2e-237 825.9 608 70.9
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.9e-237 825.5 617 75.5
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 3.5e-235 818.5 635 70.2
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 3.5e-235 818.5 614 67.9
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 4.6e-235 818.1 580 72.4
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.1e-233 813.5 620 67.6
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.1e-232 809.3 623 67.3
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 2.8e-232 808.9 620 68.2
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.4e-231 806.6 655 67.6
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 4.0e-231 805.1 624 71.8
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.0e-230 802.7 669 63.7
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 2.6e-230 802.4 632 65.8
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 9.9e-230 800.4 525 77.3
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.3e-229 800.0 616 70.0
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.7e-229 799.7 632 66.5
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 6.4e-229 797.7 610 68.5
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 8.4e-229 797.3 632 68.7
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.4e-228 796.6 622 66.2
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 9.3e-228 793.9 634 65.3
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.2e-227 793.5 632 68.4
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 2.3e-226 789.3 633 68.1
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 3.9e-226 788.5 632 66.0
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.1e-225 786.9 618 69.9
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 1.9e-225 786.2 614 72.3
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.9e-225 786.2 632 69.1
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.5e-225 785.8 536 75.0
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 8.1e-224 780.8 620 65.0
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 3.4e-222 775.4 564 70.7
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 1.9e-220 769.6 630 69.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 5.5e-220 768.1 633 68.1
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 1.2e-219 766.9 569 68.0
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 3.5e-219 765.4 635 67.2
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.5e-217 759.2 641 64.4
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 6.2e-216 754.6 551 74.2
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.1e-215 752.3 566 72.8
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 4.0e-215 751.9 512 77.3
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 5.3e-215 751.5 630 66.5
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 3.4e-214 748.8 565 68.0
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.2e-213 746.1 614 65.3
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.9e-212 743.0 614 64.7
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 6.0e-211 738.0 631 65.9
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 1.5e-206 723.4 668 59.7
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 3.4e-206 722.2 634 63.9
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 3.8e-205 718.8 634 63.6
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 2.7e-203 712.6 660 62.0
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 1.5e-201 706.8 641 63.5
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 5.7e-201 704.9 633 62.1
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 7.4e-201 704.5 633 62.1
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 6.9e-199 698.0 639 61.3
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 7.9e-195 684.5 646 56.3
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 8.2e-192 674.5 507 74.0
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 7.0e-183 644.8 467 71.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.2e-180 636.0 454 73.3
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.6e-179 633.6 629 54.5
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 2.2e-176 623.2 636 53.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 1.4e-175 620.5 466 69.7
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 6.1e-171 605.1 608 57.7
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.3e-168 595.1 542 61.1
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 2.0e-166 590.1 634 57.7
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.3e-154 550.1 380 73.9
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.2e-151 539.7 364 83.5
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 2.7e-150 536.6 629 49.1
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.1e-148 531.2 613 52.9
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 1.8e-146 523.9 616 50.8
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.8e-145 518.8 411 67.2
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 2.7e-142 510.0 624 49.7
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.1e-139 500.4 332 75.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 7.8e-134 481.9 353 70.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 5.6e-132 475.7 629 45.3
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 1.7e-125 454.1 504 56.0
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 4.0e-114 416.4 316 65.2
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.8e-113 412.5 536 46.6
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.8e-99 366.3 278 69.8
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-87 328.6 215 75.3
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.2e-87 327.0 301 60.1
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.3e-77 294.3 206 70.9
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.8e-77 292.4 191 73.8
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.2e-71 273.5 200 68.0
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.6e-70 270.4 264 58.7
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.7e-70 270.0 195 83.6
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 6.5e-64 249.6 349 42.4
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 1.7e-56 224.9 184 66.8
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 6.3e-51 206.5 161 80.7
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 8.3e-51 206.1 161 80.7
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-48 198.7 123 74.8
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 8.6e-48 196.1 162 62.3
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.9e-47 194.9 162 74.1
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.4e-44 184.1 264 45.5
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.3e-43 182.2 173 60.1
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.8e-38 164.5 169 59.2
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 9.8e-36 156.0 93 81.7
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-35 155.6 102 70.6
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 7.8e-33 146.4 161 50.9
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.6e-32 142.9 97 72.2
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.1e-26 125.9 145 51.0
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-26 125.6 79 77.2
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 5.4e-26 123.6 308 30.5
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 7.3e-23 113.2 109 56.0
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 1.1e-21 109.4 82 69.5
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.2e-21 107.1 77 71.4
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 2.6e-20 104.8 93 55.9
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 6.4e-19 100.1 58 75.9
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.1e-14 85.1 89 49.4
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 3.8e-11 74.3 86 46.5
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 8.4e-11 73.2 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 3.2e-10 71.2 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 3.2e-10 71.2 46 65.2
CAN.G254.1 Capsicum annuum HOM05D003813 ORTHO05D004557 3.6e-06 57.8 38 57.9


User provided reference genes

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