Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2218 Cannabis sativa HOM05D002453 ORTHO05D002107 3.9e-50 203.0 361 100.0
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 5.5e-28 129.4 93 64.5
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 9.4e-28 128.6 92 63.0
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 4.7e-27 126.3 91 62.6
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 4.7e-27 126.3 93 62.4
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 6.1e-27 125.9 93 62.4
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 2.8e-24 117.1 90 57.8
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 3.7e-24 116.7 95 57.9
Actinidia37632 Actinidia chinensis HOM05D002453 ORTHO05D002107 1.2e-22 111.7 92 53.3
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 5.9e-22 109.4 89 53.9
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 7.7e-22 109.0 90 55.6
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 1.0e-21 108.6 87 56.3
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 2.2e-21 107.5 86 57.0
Lalb_Chr07g0177921 Lupinus albus HOM05D002453 ORTHO05D002107 2.9e-21 107.1 87 57.5
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 1.5e-20 104.8 78 61.5
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 1.5e-20 104.8 83 56.6
Solyc12g035170.3 Solanum lycopersicum HOM05D002453 ORTHO05D002107 1.9e-20 104.4 82 59.8
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 3.2e-20 103.6 86 53.5
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 5.5e-20 102.8 82 57.3
Sopen12g014620 Solanum pennellii HOM05D002453 ORTHO05D002107 5.5e-20 102.8 81 59.3
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 7.2e-20 102.4 84 56.0
PGSC0003DMG402019957 Solanum tuberosum HOM05D002453 ORTHO05D002107 9.4e-20 102.1 82 57.3
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 2.1e-19 100.9 91 50.5
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 2.7e-19 100.5 88 52.3
Gorai.008G192600 Gossypium raimondii HOM05D002453 ORTHO05D002107 3.6e-19 100.1 62 74.2
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 1.8e-18 97.8 83 51.8
Sopen06g008530 Solanum pennellii HOM05D002453 ORTHO05D002107 5.2e-18 96.3 81 54.3
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 6.8e-18 95.9 61 72.1
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 7.5e-17 92.4 59 71.2
MELO3C001976.2 Cucumis melo HOM05D002453 ORTHO05D002107 1.3e-16 91.7 77 53.2
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 1.7e-16 91.3 60 70.0
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 1.7e-16 91.3 56 75.0
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 4.8e-16 89.7 60 66.7
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 8.3e-16 89.0 88 45.5
Thecc.03G085300 Theobroma cacao HOM05D002453 ORTHO05D002107 1.4e-15 88.2 60 68.3
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 1.8e-15 87.8 62 62.9
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 3.1e-15 87.0 60 65.0
MD06G1192500 Malus domestica HOM05D002453 ORTHO05D002107 4.1e-15 86.7 60 65.0
GSVIVG01008016001 Vitis vinifera HOM05D002453 ORTHO05D002107 4.1e-15 86.7 59 62.7
BcaC08g46890 Brassica carinata HOM05D002453 ORTHO05D002107 7.0e-15 85.9 79 48.1
C06p48690 Brassica napus HOM05D002453 ORTHO05D002107 7.0e-15 85.9 79 48.1
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 1.2e-14 85.1 57 68.4
Cpa.g.sc17.235 Carica papaya HOM05D002453 ORTHO05D002107 1.6e-14 84.7 61 62.3
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 3.5e-14 83.6 72 54.2
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 5.9e-14 82.8 55 67.3
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 5.9e-14 82.8 61 62.3
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.0e-13 82.0 59 61.0
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 1.7e-13 81.3 72 52.8
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 2.3e-13 80.9 60 60.0
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.0e-13 79.7 58 60.3
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 1.1e-12 78.6 59 62.7
Lj4g0004352 Lotus japonicus HOM05D002453 ORTHO05D002107 4.2e-12 76.6 59 54.2
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 1.2e-11 75.1 59 57.6
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 1.6e-11 74.7 59 57.6
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 1.6e-11 74.7 59 57.6
ECA247G1303 Erigeron canadensis HOM05D002453 ORTHO05D002107 2.1e-11 74.3 73 47.9
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 2.8e-11 73.9 58 58.6
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 4.7e-11 73.2 50 64.0
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 2.3e-10 70.9 92 38.0
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 2.3e-10 70.9 51 62.7
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 5.2e-10 69.7 56 53.6
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 1.5e-09 68.2 53 58.5
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 1.5e-09 68.2 53 58.5
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 2.6e-09 67.4 53 54.7
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 4.4e-09 66.6 53 56.6
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 7.5e-09 65.9 49 59.2
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 9.8e-09 65.5 51 60.8
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 1.7e-08 64.7 45 64.4
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 1.7e-08 64.7 81 33.3
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 2.2e-08 64.3 49 57.1
Carub.0002s2137 Capsella rubella HOM05D002453 ORTHO05D002107 2.8e-08 63.9 54 53.7
Oeu016166.1 Olea europaea HOM05D002453 ORTHO05D002107 3.7e-08 63.5 72 38.9
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 3.7e-08 63.5 61 50.8
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 4.9e-08 63.2 44 61.4
CARHR067850 Cardamine hirsuta HOM05D002453 ORTHO05D002107 1.1e-07 62.0 52 55.8
PGSC0003DMG400015841 Solanum tuberosum HOM05D002453 ORTHO05D002107 1.1e-07 62.0 50 56.0
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 1.4e-07 61.6 61 47.5
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 1.4e-07 61.6 51 52.9
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 1.8e-07 61.2 48 60.4
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 3.1e-07 60.5 89 30.3
Thhalv10018169m.g Eutrema salsugineum HOM05D002453 ORTHO05D002107 4.1e-07 60.1 54 51.9
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 7.0e-07 59.3 46 56.5
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 7.0e-07 59.3 89 31.5
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.5e-06 57.0 45 55.6
AT1G74580 Arabidopsis thaliana HOM05D002453 ORTHO05D002107 4.5e-06 56.6 50 52.0
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 4.5e-06 56.6 89 31.5
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 5.9e-06 56.2 89 29.2


User provided reference genes

Program Settings