Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.7e-250 868.2 442 100.0
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 2.4e-182 642.5 442 73.8
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 3.8e-180 635.2 442 72.9
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.4e-179 633.3 451 71.8
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.9e-179 632.9 451 71.8
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 1.0e-177 627.1 443 71.3
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.0e-177 627.1 440 72.7
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.7e-177 624.0 468 69.4
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.8e-175 619.0 443 70.2
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 4.8e-175 618.2 443 69.8
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.4e-174 616.7 443 70.0
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 6.5e-172 607.8 438 69.6
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.2e-170 603.6 468 67.7
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 1.6e-170 603.2 443 67.3
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 2.1e-170 602.8 443 65.9
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 3.6e-170 602.1 446 69.1
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 3.6e-170 602.1 438 68.0
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.0e-169 600.5 442 70.6
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 6.7e-169 597.8 439 67.4
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 8.8e-169 597.4 441 66.9
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 7.4e-168 594.3 442 68.3
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 2.6e-165 585.9 432 67.1
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 2.6e-165 585.9 432 67.1
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 2.6e-165 585.9 435 66.7
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 7.7e-165 584.3 435 66.7
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 2.9e-164 582.4 413 70.5
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 8.5e-164 580.9 434 67.5
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 4.2e-163 578.6 441 66.4
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 9.4e-163 577.4 429 67.8
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 6.1e-162 574.7 429 67.4
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 6.1e-162 574.7 516 59.5
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 3.9e-161 572.0 433 64.7
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 8.8e-161 570.9 442 66.7
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 8.8e-161 570.9 431 65.4
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 8.8e-161 570.9 438 65.3
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 5.7e-160 568.2 432 63.9
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 5.7e-160 568.2 439 64.9
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 5.7e-160 568.2 552 57.8
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 7.4e-160 567.8 424 67.0
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 2.2e-159 566.2 432 64.6
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 1.4e-158 563.5 429 66.4
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.4e-158 562.8 424 65.8
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 7.0e-158 561.2 385 71.4
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 9.1e-158 560.8 442 64.0
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.2e-157 560.5 471 61.8
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 2.0e-157 559.7 431 65.7
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 3.5e-157 558.9 433 64.2
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 3.5e-157 558.9 433 64.2
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 3.5e-157 558.9 434 63.1
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 7.7e-157 557.8 435 64.1
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.3e-156 557.0 436 64.7
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.3e-156 557.0 486 60.7
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 2.9e-156 555.8 433 64.4
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 5.0e-156 555.1 428 65.2
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.9e-155 553.1 432 64.1
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.9e-155 553.1 432 63.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 2.5e-155 552.7 453 60.9
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 4.2e-155 552.0 436 63.5
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.6e-154 550.1 387 69.3
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 6.1e-154 548.1 363 73.8
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 3.3e-152 542.3 435 63.7
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 5.7e-152 541.6 432 65.3
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.3e-151 540.4 438 64.8
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 8.2e-151 537.7 442 64.3
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 3.1e-150 535.8 462 60.4
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 2.0e-149 533.1 430 62.3
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 5.9e-149 531.6 383 69.5
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.7e-148 530.0 387 68.0
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 3.8e-148 528.9 471 57.1
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 8.5e-148 527.7 381 69.3
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 2.5e-147 526.2 568 51.9
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 3.2e-147 525.8 442 61.3
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 4.2e-147 525.4 444 61.0
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 4.0e-145 518.8 429 59.4
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 1.2e-141 507.3 470 57.9
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 2.0e-141 506.5 369 70.5
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 4.7e-138 495.4 413 62.7
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.8e-137 493.4 441 57.8
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.6e-133 480.3 429 57.8
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 4.7e-130 468.8 426 55.2
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 5.7e-128 461.8 322 72.4
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 3.7e-127 459.1 461 55.5
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 6.6e-124 448.4 320 69.4
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.5e-123 447.2 408 57.6
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 1.5e-123 447.2 431 55.0
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 2.2e-119 433.3 322 69.6
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.9e-115 420.2 388 55.7
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 5.8e-112 408.7 441 49.4
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.7e-108 397.1 427 48.5
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 9.5e-107 391.3 421 49.9
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.5e-104 384.0 286 67.5
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 6.4e-103 378.6 286 65.4
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 1.6e-101 374.0 315 62.2
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 7.3e-99 365.2 280 67.9
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.6e-98 364.0 252 71.8
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 4.0e-97 359.4 432 44.4
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 5.4e-86 322.4 352 48.3
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 1.4e-81 307.8 288 56.6
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 3.3e-59 233.4 194 59.8
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 6.9e-57 225.7 285 47.0
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 2.9e-55 220.3 183 62.3
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 9.1e-49 198.7 154 64.9
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 1.3e-47 194.9 154 64.9
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.7e-47 194.5 332 38.3
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 2.9e-47 193.7 305 40.3
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 4.7e-45 186.4 149 65.8
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 5.7e-43 179.5 131 67.9
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 2.2e-42 177.6 200 47.5
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.0e-39 168.7 156 57.7
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 3.8e-39 166.8 126 66.7
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 4.0e-36 156.8 157 51.0
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.5e-32 143.7 98 72.4
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 5.0e-31 139.8 96 62.5
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 1.6e-29 134.8 90 66.7
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 2.7e-29 134.0 93 67.7
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 6.8e-28 129.4 368 28.5
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 9.1e-17 92.4 156 34.6
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 8.0e-13 79.3 63 54.0
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 1.2e-11 75.5 55 61.8
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 1.3e-10 72.0 49 65.3
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 2.4e-09 67.8 69 46.4
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 8.6e-07 59.3 68 39.7


User provided reference genes

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