Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 1.6e-103 380.2 319 100.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.0e-89 334.3 319 80.3
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 3.8e-89 332.4 317 80.8
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 8.4e-89 331.3 325 79.1
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.1e-88 330.9 318 80.8
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 4.2e-88 328.9 319 79.0
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 5.5e-88 328.6 319 87.5
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 5.5e-88 328.6 319 78.1
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 9.3e-88 327.8 325 78.2
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 9.3e-88 327.8 318 78.3
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.2e-87 327.4 327 78.3
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.0e-86 324.3 319 84.0
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 2.3e-86 323.2 320 78.1
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.5e-85 320.5 319 75.5
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.3e-85 319.3 319 83.4
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 5.7e-85 318.5 319 87.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 7.4e-85 318.2 317 88.0
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.6e-84 317.0 317 81.1
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.9e-83 311.6 318 75.8
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.5e-82 310.5 318 75.5
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.5e-82 310.5 317 86.4
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.0e-82 310.1 318 75.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.5e-82 308.9 319 75.5
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 4.5e-82 308.9 319 75.2
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 7.7e-82 308.1 317 86.4
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.7e-81 307.0 317 86.4
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 2.9e-81 306.2 309 78.6
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 2.9e-81 306.2 316 86.7
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.9e-81 306.2 317 75.1
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 3.8e-81 305.8 317 86.4
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 3.8e-81 305.8 317 75.1
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 3.8e-81 305.8 317 75.1
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.4e-80 303.9 317 78.2
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.9e-80 303.5 317 86.8
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.5e-80 303.1 317 76.3
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 7.2e-80 301.6 317 79.8
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 7.2e-80 301.6 317 86.1
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.1e-79 300.1 306 88.9
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 3.6e-79 299.3 317 73.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 4.6e-79 298.9 307 78.2
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 6.1e-79 298.5 317 82.0
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.0e-78 297.7 317 80.4
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 3.0e-78 296.2 317 74.4
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 5.1e-78 295.4 317 77.9
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 2.0e-77 293.5 317 84.5
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.5e-74 283.9 309 73.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.0e-74 283.5 309 73.5
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 3.9e-70 269.2 143 86.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 3.9e-70 269.2 143 86.7
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.1e-69 267.7 143 86.7
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.1e-69 267.7 143 86.7
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 2.0e-69 266.9 143 86.7
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 7.4e-69 265.0 143 85.3
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.7e-68 263.8 307 80.8
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 2.2e-68 263.5 143 86.0
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 8.2e-68 261.5 143 86.0
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.1e-67 261.2 144 85.4
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.4e-67 260.8 143 84.6
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.4e-67 260.8 144 84.7
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.4e-67 260.8 144 85.4
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.4e-67 260.8 143 83.9
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 2.4e-67 260.0 143 84.6
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 3.1e-67 259.6 143 82.5
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 3.1e-67 259.6 143 86.7
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 4.1e-67 259.2 143 83.9
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 4.1e-67 259.2 145 84.8
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 5.3e-67 258.8 144 84.7
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 7.0e-67 258.5 143 81.8
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 9.1e-67 258.1 143 86.0
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 9.1e-67 258.1 143 86.0
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 9.1e-67 258.1 143 85.3
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 2.6e-66 256.5 143 83.2
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.3e-65 254.2 143 83.9
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.7e-65 253.8 143 81.8
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.7e-65 253.8 143 81.8
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.9e-64 250.4 143 81.1
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 4.2e-64 249.2 143 80.4
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 7.2e-64 248.4 143 81.8
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 1.2e-63 247.7 146 79.5
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 80.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 80.4
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 79.0
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 76.9
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.9
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.9
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 76.9
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.9
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.2
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.9
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 74.8
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 74.8
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 75.5
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 74.8
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 4.8e-60 235.7 144 75.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 4.8e-60 235.7 144 75.7
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 6.3e-60 235.3 143 74.1
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 1.1e-59 234.6 144 76.4
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-59 234.6 143 74.8
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-59 234.6 144 75.7
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-59 234.6 144 75.7
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.1e-59 234.6 144 75.7
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.1e-59 234.6 143 75.5
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 2.4e-59 233.4 276 73.9
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 3.1e-59 233.0 143 74.1
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 9.1e-59 231.5 143 74.1
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 1.2e-58 231.1 143 72.7
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 5.9e-58 228.8 318 74.5
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 5.0e-57 225.7 317 70.3
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 4.8e-52 209.1 318 67.3
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 5.0e-49 199.1 115 76.5
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 1.0e-46 191.4 315 57.1
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 2.2e-44 183.7 144 58.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 4.9e-44 182.6 139 59.7
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 4.9e-44 182.6 143 60.1
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 6.3e-44 182.2 143 60.1
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.1e-43 181.4 305 70.5
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.4e-43 181.0 318 60.1
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 6.6e-41 172.2 106 77.4
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 9.5e-40 168.3 332 48.5
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 6.8e-38 162.2 306 64.7
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 5.6e-32 142.5 208 72.6
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 2.8e-31 140.2 107 58.9
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.6e-29 133.7 114 60.5
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.0e-25 120.2 305 36.7
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 2.9e-20 103.6 93 55.9
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.8e-15 87.0 143 35.0
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.6e-13 80.5 120 42.5
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.6e-13 79.0 143 32.2
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 8.4e-12 75.5 111 42.3
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.2e-10 71.6 49 63.3
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 5.1e-09 66.2 41 68.3
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 1.2e-07 61.6 32 81.2
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 2.1e-07 60.8 35 71.4
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 2.8e-07 60.5 71 87.3
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 1.8e-06 57.8 135 28.1
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.8e-06 57.8 135 28.1
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.8e-06 57.8 140 27.9
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 1.8e-06 57.8 135 28.1
BcaB01g04481 Brassica carinata HOM05D000347 ORTHO05D001997 2.4e-06 57.4 135 28.1
BcaB01g04544 Brassica carinata HOM05D000347 ORTHO05D001997 2.4e-06 57.4 134 27.6
BcaB01g04548 Brassica carinata HOM05D000347 ORTHO05D001997 8.9e-06 55.5 79 38.0


User provided reference genes

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