Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 0.0e+00 2250.3 1143 100.0
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 0.0e+00 1140.9 1177 55.6
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1137.9 1184 55.7
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1134.4 1177 55.5
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 0.0e+00 1117.8 1173 55.8
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1111.3 1177 55.2
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1100.1 1247 52.0
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 0.0e+00 1087.0 1151 54.6
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.2e-309 1065.8 1184 53.5
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 8.8e-306 1053.9 1229 51.3
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 2.6e-305 1052.4 1151 53.5
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 2.8e-304 1048.9 1203 52.2
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 6.8e-298 1027.7 1181 51.9
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.2e-290 1001.5 978 57.3
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 1.7e-285 986.5 1161 49.7
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 5.6e-284 981.5 1167 50.3
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 4.0e-282 975.3 1146 50.8
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 2.0e-281 973.0 1154 49.9
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 2.5e-276 956.1 1157 49.2
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 2.8e-275 952.6 1151 49.5
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.2e-273 947.2 1153 49.5
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 7.1e-271 937.9 1177 47.8
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 1.6e-270 936.8 1168 48.2
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 9.6e-268 927.5 1152 48.3
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 7.8e-262 907.9 1184 47.6
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 3.3e-260 902.5 1133 48.7
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 1.3e-259 900.6 1146 48.5
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.1e-258 897.5 1182 47.3
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 1.2e-257 894.0 1159 48.5
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 6.4e-256 888.3 1191 46.9
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 4.2e-255 885.6 1183 46.9
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 1.2e-254 884.0 1183 46.9
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 6.6e-253 878.2 1195 45.9
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 9.6e-252 874.4 1165 46.4
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 1.6e-251 873.6 1148 47.1
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 7.6e-249 864.8 1167 46.4
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.3e-248 864.0 1153 47.0
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 2.1e-246 856.7 1132 46.8
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 7.9e-246 854.7 1155 46.9
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 2.8e-243 846.3 1147 45.7
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 1.1e-242 844.3 1155 46.4
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 1.1e-242 844.3 1123 46.5
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 7.6e-241 838.2 1163 46.7
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 5.5e-239 832.0 1166 44.5
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 4.6e-238 828.9 1156 46.2
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 1.9e-236 823.5 1186 45.7
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 5.7e-236 822.0 1156 45.5
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 7.4e-236 821.6 1173 45.9
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 9.6e-236 821.2 1168 45.5
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 6.2e-235 818.5 1185 44.5
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 4.1e-234 815.8 918 51.6
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 4.1e-234 815.8 1151 45.1
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 3.4e-233 812.8 1142 45.4
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 6.7e-229 798.5 1148 44.8
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 5.3e-226 788.9 1165 43.7
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.3e-224 784.3 560 69.1
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 6.5e-224 781.9 1165 43.3
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 3.2e-223 779.6 552 68.7
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 2.3e-221 773.5 1179 43.6
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 2.0e-220 770.4 1166 43.4
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 2.8e-219 766.5 1178 42.7
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 4.8e-219 765.8 1172 41.7
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.5e-217 760.8 1180 42.4
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 6.5e-216 755.4 1165 43.0
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 1.9e-215 753.8 1122 42.7
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 5.5e-215 752.3 1136 42.7
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.6e-214 750.7 1183 42.0
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 3.6e-214 749.6 1150 42.0
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 4.7e-214 749.2 1166 42.1
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 7.9e-214 748.4 1175 42.1
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 5.1e-213 745.7 1160 41.8
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 8.2e-211 738.4 1149 43.0
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 1.4e-210 737.6 1166 40.8
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 2.4e-210 736.9 1060 43.5
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 9.1e-210 734.9 914 47.3
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 7.2e-207 725.3 1142 41.7
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 2.1e-206 723.8 1202 41.3
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 2.3e-205 720.3 1139 41.5
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 4.4e-204 716.1 1168 41.3
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 1.7e-203 714.1 957 44.3
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 4.1e-202 709.5 1166 41.8
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.6e-201 707.6 1155 41.5
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 7.7e-201 705.3 1053 43.7
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.3e-200 704.5 1166 41.3
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 1.7e-200 704.1 1173 40.6
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 2.9e-200 703.4 1164 40.0
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 7.2e-199 698.7 1050 43.6
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 9.4e-199 698.4 1049 43.0
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 2.3e-197 693.7 1163 40.2
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.7e-195 687.6 1202 39.9
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 9.1e-194 681.8 695 53.2
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 2.1e-190 670.6 1038 43.2
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.4e-189 667.9 1178 40.2
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 4.4e-188 662.9 779 50.8
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 1.5e-183 647.9 1061 40.2
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 4.3e-183 646.4 1158 38.5
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.4e-181 641.3 1001 42.7
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 5.0e-176 622.9 1109 38.2
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 1.8e-173 614.4 1086 37.6
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 1.7e-168 597.8 582 52.1
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.3e-163 581.6 946 42.8
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 3.8e-147 526.9 1164 35.7
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.2e-137 495.4 471 57.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.1e-134 482.6 932 39.9
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 6.9e-133 479.6 317 73.5
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.9e-131 474.2 744 39.1
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 2.1e-126 458.0 422 55.5
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 4.8e-126 456.8 889 37.7
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 2.1e-121 441.4 512 46.9
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 8.7e-120 436.0 538 45.4
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 3.1e-117 427.6 498 43.4
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 7.6e-116 422.9 822 35.4
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 5.3e-109 400.2 689 36.7
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 2.0e-92 345.1 814 34.5
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 4.1e-77 294.3 229 68.6
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.5e-76 290.8 750 33.5
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.2e-71 276.2 810 31.9
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.6e-68 265.8 227 58.1
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.2e-33 147.5 270 35.6
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 3.2e-29 135.2 600 28.2
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.4e-24 119.8 477 30.8
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.2e-20 106.7 155 45.2
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 5.1e-19 101.3 191 33.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.5e-18 99.0 108 54.6
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 7.4e-18 97.4 174 40.8
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 9.0e-16 90.5 113 45.1
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 3.8e-14 85.1 57 64.9
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 6.4e-14 84.3 68 58.8
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 6.4e-14 84.3 83 50.6
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.1e-13 83.6 51 72.5
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 4.2e-13 81.6 154 40.3
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 3.5e-12 78.6 71 54.9
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.5e-12 78.6 55 63.6


User provided reference genes

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