Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2043 Cannabis sativa HOM05D006033 ORTHO05D007112 1.9e-101 372.5 186 100.0
CANSAT80G2253 Cannabis sativa HOM05D006033 ORTHO05D007112 3.6e-47 192.2 101 100.0
MD06G1141900 Malus domestica HOM05D006033 ORTHO05D007112 1.2e-31 140.6 101 72.3
MD14G1157100 Malus domestica HOM05D006033 ORTHO05D007112 6.1e-31 138.3 101 70.3
Prupe.5G151100 Prunus persica HOM05D006033 ORTHO05D007112 6.1e-31 138.3 102 70.6
GSVIVG01008543001 Vitis vinifera HOM05D006033 ORTHO05D007112 1.8e-30 136.7 107 62.6
RcHm_v2.0_Chr7g0190201 Rosa chinensis HOM05D006033 ORTHO05D007112 3.0e-30 136.0 102 68.6
FAN08G2192 Fragaria x ananassa HOM05D006033 ORTHO05D007112 5.7e-29 131.7 102 66.7
FAN13G1806 Fragaria x ananassa HOM05D006033 ORTHO05D007112 5.7e-29 131.7 102 66.7
FAN18G2263 Fragaria x ananassa HOM05D006033 ORTHO05D007112 1.7e-28 130.2 102 65.7
Cpa.g.sc13.116 Carica papaya HOM05D006033 ORTHO05D007112 8.3e-28 127.9 109 64.2
Eucgr.K02726 Eucalyptus grandis HOM05D006033 ORTHO05D007112 8.3e-28 127.9 104 65.4
FAN04G2747 Fragaria x ananassa HOM05D006033 ORTHO05D007112 8.3e-28 127.9 102 63.7
Sed0010085 Sechium edule HOM05D006033 ORTHO05D007112 8.3e-28 127.9 101 67.3
ClCG03G003760 Citrullus lanatus HOM05D006033 ORTHO05D007112 1.1e-27 127.5 101 65.3
TAR374G1541 Trochodendron aralioides HOM05D006033 ORTHO05D007112 2.4e-27 126.3 100 63.0
CsaV3_1G009650 Cucumis sativus L. HOM05D006033 ORTHO05D007112 3.1e-27 125.9 101 64.4
TWI23G0550 Tripterygium wilfordii HOM05D006033 ORTHO05D007112 3.1e-27 125.9 99 62.6
QL10p002899 Quercus lobata HOM05D006033 ORTHO05D007112 4.1e-27 125.6 99 64.6
Sabra15G0117100 Salix brachista HOM05D006033 ORTHO05D007112 4.1e-27 125.6 99 62.6
COL.COLO4_28129 Corchorus olitorius HOM05D006033 ORTHO05D007112 7.0e-27 124.8 100 63.0
MELO3C002361.2 Cucumis melo HOM05D006033 ORTHO05D007112 1.2e-26 124.0 103 65.0
Haze_07138 Corylus avellana HOM05D006033 ORTHO05D007112 2.7e-26 122.9 99 62.6
Manes.06G119600 Manihot esculenta HOM05D006033 ORTHO05D007112 2.7e-26 122.9 102 63.7
PSO017G2963 Papaver somniferum HOM05D006033 ORTHO05D007112 2.7e-26 122.9 106 64.2
Potri.015G096300 Populus trichocarpa HOM05D006033 ORTHO05D007112 2.7e-26 122.9 99 62.6
Actinidia08871 Actinidia chinensis HOM05D006033 ORTHO05D007112 4.5e-26 122.1 101 63.4
Cfa018795 Carpinus fangiana HOM05D006033 ORTHO05D007112 4.5e-26 122.1 99 62.6
PSO478G4249 Papaver somniferum HOM05D006033 ORTHO05D007112 4.5e-26 122.1 105 63.8
Cc03_g15140 Coffea canephora HOM05D006033 ORTHO05D007112 1.0e-25 120.9 107 57.9
Aqoxy5G03378 Aquilegia oxysepala HOM05D006033 ORTHO05D007112 1.3e-25 120.6 100 63.0
HanXRQChr05g0155041 Helianthus annuus HOM05D006033 ORTHO05D007112 1.3e-25 120.6 99 61.6
PGR044G2394 Punica granatum HOM05D006033 ORTHO05D007112 1.3e-25 120.6 99 65.7
CiPaw.12G043200 Carya illinoinensis HOM05D006033 ORTHO05D007112 2.3e-25 119.8 99 60.6
Ciclev10031478m.g Citrus clementina HOM05D006033 ORTHO05D007112 2.9e-25 119.4 99 61.6
arahy.Tifrunner.gnm1.ann1.Z456W4 Arachis hypogaea HOM05D006033 ORTHO05D007112 3.8e-25 119.0 99 58.6
DCAR_021619 Daucus carota HOM05D006033 ORTHO05D007112 3.8e-25 119.0 148 45.9
Lsat_1_v5_gn_5_13720 Lactuca sativa HOM05D006033 ORTHO05D007112 5.0e-25 118.6 99 60.6
Thecc.03G129200 Theobroma cacao HOM05D006033 ORTHO05D007112 5.0e-25 118.6 100 62.0
Ca_16046_v3 Cicer arietinum L. HOM05D006033 ORTHO05D007112 8.6e-25 117.9 99 58.6
Phvul.003G211200 Phaseolus vulgaris HOM05D006033 ORTHO05D007112 8.6e-25 117.9 99 62.6
Sc10g0010470 Simmondsia chinensis HOM05D006033 ORTHO05D007112 8.6e-25 117.9 101 60.4
EL10Ac5g11413 Beta vulgaris HOM05D006033 ORTHO05D007112 1.1e-24 117.5 110 56.4
Duzib205G1080 Durio zibethinus HOM05D006033 ORTHO05D007112 1.5e-24 117.1 100 59.0
VMungo1215G0762 Vigna mungo HOM05D006033 ORTHO05D007112 1.5e-24 117.1 99 61.6
AUR62029613 Chenopodium quinoa HOM05D006033 ORTHO05D007112 1.9e-24 116.7 108 57.4
AUR62034824 Chenopodium quinoa HOM05D006033 ORTHO05D007112 1.9e-24 116.7 111 55.0
Nn4g22317 Nelumbo nucifera HOM05D006033 ORTHO05D007112 1.9e-24 116.7 100 60.0
Lalb_Chr08g0237161 Lupinus albus HOM05D006033 ORTHO05D007112 2.5e-24 116.3 99 60.6
Medtr3g099240 Medicago truncatula HOM05D006033 ORTHO05D007112 2.5e-24 116.3 99 58.6
Atru.chr6.1793 Acer truncatum HOM05D006033 ORTHO05D007112 4.2e-24 115.5 100 60.0
Actinidia36806 Actinidia chinensis HOM05D006033 ORTHO05D007112 4.2e-24 115.5 99 61.6
arahy.Tifrunner.gnm1.ann1.YV4Q3G Arachis hypogaea HOM05D006033 ORTHO05D007112 7.2e-24 114.8 99 57.6
Gohir.A12G189600 Gossypium hirsutum HOM05D006033 ORTHO05D007112 9.5e-24 114.4 103 62.1
Medtr2g045230 Medicago truncatula HOM05D006033 ORTHO05D007112 9.5e-24 114.4 99 57.6
CSS0003528 Camellia sinensis var. sinensis HOM05D006033 ORTHO05D007112 1.2e-23 114.0 99 58.6
Glyma.17G130200 Glycine max HOM05D006033 ORTHO05D007112 1.2e-23 114.0 99 59.6
Peaxi162Scf00089g00624 Petunia axillaris HOM05D006033 ORTHO05D007112 4.7e-23 112.1 99 54.5
Glyma.05G048200 Glycine max HOM05D006033 ORTHO05D007112 6.1e-23 111.7 99 60.6
Lj5A96T53 Lonicera japonica HOM05D006033 ORTHO05D007112 6.1e-23 111.7 100 58.0
THA.LOC104811587 Tarenaya hassleriana HOM05D006033 ORTHO05D007112 6.1e-23 111.7 104 60.6
TAR622G1220 Trochodendron aralioides HOM05D006033 ORTHO05D007112 6.1e-23 111.7 99 59.6
Lj1g0005507 Lotus japonicus HOM05D006033 ORTHO05D007112 8.0e-23 111.3 99 57.6
Gohir.D12G192000 Gossypium hirsutum HOM05D006033 ORTHO05D007112 1.0e-22 110.9 103 61.2
MBI16_g07739_MAGBIO Magnolia biondii HOM05D006033 ORTHO05D007112 1.8e-22 110.2 103 65.0
CARHR004850 Cardamine hirsuta HOM05D006033 ORTHO05D007112 2.3e-22 109.8 102 61.8
TPR.G14208 Trifolium pratense HOM05D006033 ORTHO05D007112 2.3e-22 109.8 99 55.6
Hund02441 Selenicereus undatus HOM05D006033 ORTHO05D007112 3.0e-22 109.4 99 54.5
vmacro16716 Vaccinium macrocarpon HOM05D006033 ORTHO05D007112 6.8e-22 108.2 107 55.1
Ah.02g114900 Amaranthus hybridus HOM05D006033 ORTHO05D007112 8.9e-22 107.8 111 54.1
Os02g0506500 Oryza sativa ssp. japonica HOM05D006033 ORTHO05D007112 1.5e-21 107.1 101 55.4
Psat5g051280 Pisum sativum HOM05D006033 ORTHO05D007112 1.5e-21 107.1 100 55.0
Solyc03g111340.4 Solanum lycopersicum HOM05D006033 ORTHO05D007112 2.6e-21 106.3 99 55.6
Zm00001eb241690 Zea mays HOM05D006033 ORTHO05D007112 3.4e-21 105.9 101 57.4
ATR0561G152 Amborella trichopoda HOM05D006033 ORTHO05D007112 4.4e-21 105.5 100 57.0
AL1G15150 Arabidopsis lyrata HOM05D006033 ORTHO05D007112 4.4e-21 105.5 105 61.0
AT1G05350 Arabidopsis thaliana HOM05D006033 ORTHO05D007112 4.4e-21 105.5 105 61.0
A10p04060 Brassica napus HOM05D006033 ORTHO05D007112 4.4e-21 105.5 104 60.6
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 5.7e-21 105.1 108 55.6
BcaC07g42135 Brassica carinata HOM05D006033 ORTHO05D007112 7.5e-21 104.8 104 59.6
Sopen03g030470 Solanum pennellii HOM05D006033 ORTHO05D007112 7.5e-21 104.8 99 54.5
Sp1g04220 Schrenkiella parvula HOM05D006033 ORTHO05D007112 9.8e-21 104.4 103 61.2
PGSC0003DMG401015240 Solanum tuberosum HOM05D006033 ORTHO05D007112 9.8e-21 104.4 99 54.5
SGA_v2.0_scaffold121G33024 Striga asiatica HOM05D006033 ORTHO05D007112 9.8e-21 104.4 148 44.6
HPP92_007005 Vanilla planifolia HOM05D006033 ORTHO05D007112 9.8e-21 104.4 102 57.8
BraA10t42677Z Brassica rapa HOM05D006033 ORTHO05D007112 1.3e-20 104.0 104 60.6
Gorai.008G206300 Gossypium raimondii HOM05D006033 ORTHO05D007112 2.2e-20 103.2 103 56.3
C08p51760 Brassica napus HOM05D006033 ORTHO05D007112 3.7e-20 102.4 104 58.7
BolC8t52705H Brassica oleracea HOM05D006033 ORTHO05D007112 3.7e-20 102.4 104 58.7
Migut.E01431 Erythranthe guttata HOM05D006033 ORTHO05D007112 3.7e-20 102.4 107 56.1
C05p03680 Brassica napus HOM05D006033 ORTHO05D007112 8.3e-20 101.3 104 58.7
BolC5t29145H Brassica oleracea HOM05D006033 ORTHO05D007112 8.3e-20 101.3 104 58.7
Thhalv10007699m.g Eutrema salsugineum HOM05D006033 ORTHO05D007112 8.3e-20 101.3 106 58.5
Nitab4.5_0004750g0050 Nicotiana tabacum HOM05D006033 ORTHO05D007112 8.3e-20 101.3 99 52.5
A09p67480 Brassica napus HOM05D006033 ORTHO05D007112 1.1e-19 100.9 104 58.7
Aa31LG1G19340 Aethionema arabicum HOM05D006033 ORTHO05D007112 1.4e-19 100.5 152 42.8
MSTRG.1619 Avicennia marina HOM05D006033 ORTHO05D007112 4.1e-19 99.0 99 55.6
BraA09t42076Z Brassica rapa HOM05D006033 ORTHO05D007112 5.4e-19 98.6 105 54.3
CAN.G352.14 Capsicum annuum HOM05D006033 ORTHO05D007112 1.6e-18 97.1 99 50.5
SalBow8G5593 Salvia bowleyana HOM05D006033 ORTHO05D007112 1.6e-18 97.1 153 45.8
Carub.0001s0469 Capsella rubella HOM05D006033 ORTHO05D007112 2.0e-18 96.7 108 54.6
Nitab4.5_0003282g0110 Nicotiana tabacum HOM05D006033 ORTHO05D007112 2.0e-18 96.7 148 40.5
CDE02G1207 Ceratophyllum demersum HOM05D006033 ORTHO05D007112 2.9e-17 92.8 85 55.3
TWI39G0081 Tripterygium wilfordii HOM05D006033 ORTHO05D007112 5.0e-17 92.0 100 49.0
unitig_46.g18225 Utricularia gibba HOM05D006033 ORTHO05D007112 8.6e-17 91.3 101 52.5
SMO364G0767 Selaginella moellendorffii HOM05D006033 ORTHO05D007112 3.6e-15 85.9 108 48.1
Potri.012G097700 Populus trichocarpa HOM05D006033 ORTHO05D007112 2.0e-13 80.1 58 70.7
Pp3c7_23140 Physcomitrium patens HOM05D006033 ORTHO05D007112 7.5e-13 78.2 120 43.3
SEGI_30811 Sequoiadendron giganteum HOM05D006033 ORTHO05D007112 7.5e-13 78.2 102 44.1
FvH4_5g08320 Fragaria vesca HOM05D006033 ORTHO05D007112 2.9e-12 76.3 55 69.1
Lj9A479G53 Lonicera japonica HOM05D006033 ORTHO05D007112 1.9e-11 73.6 54 64.8
Gohir.D07G055650 Gossypium hirsutum HOM05D006033 ORTHO05D007112 4.1e-11 72.4 100 45.0
Mapoly0009s0069 Marchantia polymorpha HOM05D006033 ORTHO05D007112 9.2e-11 71.2 111 44.1
TAR027G0002 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.1e-08 64.3 42 71.4
Oeu008767.2 Olea europaea HOM05D006033 ORTHO05D007112 1.6e-07 60.5 90 40.0
TAR376G0865 Trochodendron aralioides HOM05D006033 ORTHO05D007112 3.6e-07 59.3 40 67.5


User provided reference genes

Program Settings