Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 2.9e-59 231.5 100 100.0
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 4.7e-54 214.2 100 94.0
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 6.2e-54 213.8 100 92.0
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 4.0e-53 211.1 100 91.0
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 4.0e-53 211.1 100 90.0
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 6.8e-53 210.3 100 91.0
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 1.2e-52 209.5 100 90.0
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 1.5e-52 209.1 100 91.0
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 7.5e-52 206.8 100 89.0
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 7.5e-52 206.8 100 89.0
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 7.5e-52 206.8 100 89.0
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 9.8e-52 206.5 100 89.0
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 1.1e-50 203.0 100 88.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 1.9e-50 202.2 100 88.0
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 3.2e-50 201.4 99 86.9
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 3.2e-50 201.4 100 87.0
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 3.2e-50 201.4 100 87.0
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 3.2e-50 201.4 100 87.0
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 4.1e-50 201.1 100 88.0
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 5.4e-50 200.7 98 87.8
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 5.4e-50 200.7 100 86.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 7.0e-50 200.3 98 88.8
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 7.0e-50 200.3 100 86.0
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 1.2e-49 199.5 98 88.8
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 2.7e-49 198.4 100 85.0
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 7.8e-49 196.8 100 86.0
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 1.0e-48 196.4 100 85.0
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 1.0e-48 196.4 100 83.0
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 1.0e-48 196.4 100 84.0
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 1.3e-48 196.1 98 84.7
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 5.1e-48 194.1 100 85.0
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 5.1e-48 194.1 100 84.0
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 6.6e-48 193.7 100 84.0
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 1.1e-47 193.0 100 82.0
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 3.3e-47 191.4 100 83.0
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 7.3e-47 190.3 100 83.0
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 9.5e-47 189.9 100 79.0
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 9.5e-47 189.9 95 86.3
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 1.6e-46 189.1 100 84.0
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 1.6e-46 189.1 100 81.0
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 1.6e-46 189.1 100 81.0
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 1.6e-46 189.1 100 82.0
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 2.8e-46 188.3 100 83.0
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 1.1e-45 186.4 100 81.0
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 1.4e-45 186.0 100 80.0
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 1.4e-45 186.0 98 80.6
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 78.0
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 1.8e-45 185.7 100 78.0
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 3.1e-45 184.9 100 77.0
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 4.0e-45 184.5 100 80.0
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 5.2e-45 184.1 100 80.0
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 1.2e-44 183.0 100 83.0
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 2.0e-44 182.2 100 80.0
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 3.4e-44 181.4 100 82.0
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 3.4e-44 181.4 88 89.8
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 3.4e-44 181.4 98 77.6
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 3.4e-44 181.4 100 82.0
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 3.4e-44 181.4 100 79.0
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 4.4e-44 181.0 100 80.0
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 4.4e-44 181.0 100 82.0
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 4.4e-44 181.0 97 77.3
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 5.8e-44 180.6 100 82.0
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 5.8e-44 180.6 100 82.0
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 7.5e-44 180.3 98 75.5
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 81.0
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 81.0
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 81.0
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 81.0
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 81.0
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 2.2e-43 178.7 100 81.0
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 3.7e-43 177.9 100 76.0
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 3.7e-43 177.9 100 79.0
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 1.4e-42 176.0 100 77.0
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 9.2e-42 173.3 85 87.1
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 9.2e-42 173.3 100 73.0
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 1.3e-40 169.5 134 59.7
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 1.3e-40 169.5 100 72.0
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 2.3e-40 168.7 98 73.5
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 3.9e-40 167.9 100 70.0
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 5.1e-40 167.5 100 71.0
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 5.1e-40 167.5 100 72.0
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 5.1e-40 167.5 100 72.0
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 1.2e-38 162.9 100 75.0
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 1.2e-38 162.9 100 75.0
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 5.8e-36 154.1 99 65.7
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 9.9e-36 153.3 100 66.0
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 1.7e-35 152.5 100 65.0
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 3.8e-35 151.4 88 78.4
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 2.7e-33 145.2 111 59.5
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 3.5e-33 144.8 170 45.9
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 4.6e-33 144.4 99 62.6
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 7.8e-33 143.7 99 63.6
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 1.8e-29 132.5 70 81.4
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 1.2e-28 129.8 101 58.4
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 1.6e-25 119.4 101 55.4
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 1.1e-21 106.7 58 81.0
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 1.4e-21 106.3 102 52.0
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 1.6e-17 92.8 100 43.0
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 8.1e-14 80.5 40 85.0
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 4.0e-13 78.2 37 89.2
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 1.3e-11 73.2 31 96.8
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 2.8e-06 55.5 76 34.2
MELO3C009354.2 Cucumis melo HOM05D053349 ORTHO05D009192 4.8e-06 54.7 24 83.3
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 4.8e-06 54.7 74 33.8


User provided reference genes

Program Settings