Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 5.5e-119 431.0 225 100.0
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.5e-116 422.9 225 99.1
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.6e-54 216.9 228 55.7
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.8e-53 213.4 221 57.9
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 8.4e-51 204.5 201 57.2
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 5.5e-50 201.8 221 56.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 5.5e-50 201.8 220 55.0
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 7.1e-50 201.4 224 54.9
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.2e-49 200.7 222 54.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 6.7e-48 194.9 221 55.2
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.1e-47 194.1 222 53.2
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 5.6e-47 191.8 221 52.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.6e-47 191.0 219 51.6
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 3.7e-46 189.1 221 52.5
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.7e-46 189.1 219 53.4
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.2e-46 188.3 223 49.8
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.1e-45 187.6 222 51.4
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 2.4e-45 186.4 219 52.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 3.1e-45 186.0 222 50.9
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 4.0e-45 185.7 220 50.5
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.0e-45 185.7 223 50.2
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 4.0e-45 185.7 213 51.6
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 4.0e-45 185.7 184 56.5
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.2e-44 184.1 222 50.5
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.0e-44 183.3 222 49.1
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.0e-44 183.3 236 49.2
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 5.8e-44 181.8 167 62.9
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.6e-44 181.4 191 57.6
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 6.5e-43 178.3 196 54.6
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 8.4e-43 177.9 235 49.8
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.2e-42 175.6 223 49.3
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.2e-42 175.6 223 49.3
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.2e-41 174.1 144 63.9
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.6e-41 173.7 192 52.6
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.1e-41 173.3 158 61.4
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 3.5e-41 172.6 217 46.5
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 6.0e-41 171.8 167 57.5
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 7.9e-41 171.4 151 64.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.3e-40 169.9 162 55.6
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.0e-40 169.5 278 43.5
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 6.7e-40 168.3 133 65.4
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-39 167.5 154 57.8
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.5e-39 166.4 209 48.3
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.3e-39 166.0 257 46.7
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 4.3e-39 165.6 242 45.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.6e-38 163.7 139 61.9
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 4.8e-38 162.2 167 54.5
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 4.8e-38 162.2 206 50.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 8.2e-38 161.4 162 57.4
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.4e-37 159.8 163 52.8
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.4e-37 159.8 166 51.2
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.1e-37 159.5 158 58.9
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 3.1e-37 159.5 166 52.4
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 3.1e-37 159.5 166 53.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.9e-37 158.3 190 54.2
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.0e-36 156.8 223 46.2
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 7.6e-36 154.8 151 53.6
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 2.2e-35 153.3 152 52.0
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-34 151.0 158 55.1
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.9e-34 150.2 146 56.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 4.2e-34 149.1 168 49.4
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 7.2e-34 148.3 160 49.4
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 9.3e-34 147.9 182 50.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.6e-33 147.1 304 37.8
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.7e-33 146.4 152 52.0
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 6.7e-32 141.7 220 42.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.5e-31 140.6 164 48.8
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.9e-31 140.2 213 40.8
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.9e-31 140.2 164 48.2
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.5e-31 139.8 148 54.7
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 3.3e-31 139.4 156 48.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.7e-31 138.7 137 53.3
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 9.7e-31 137.9 161 49.1
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.6e-30 137.1 130 55.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 6.3e-30 135.2 90 71.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.2e-28 131.0 159 41.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 2.2e-27 126.7 129 51.9
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.8e-22 109.0 173 35.3
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.8e-21 107.1 201 30.8
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.4e-21 106.7 147 34.7
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.4e-21 106.7 167 34.7
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 4.1e-21 105.9 182 33.0
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.3e-21 105.5 154 36.4
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 9.1e-21 104.8 118 44.1
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 2.6e-20 103.2 216 30.6
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.6e-20 103.2 146 50.0
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.6e-20 103.2 198 35.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 5.9e-20 102.1 155 36.1
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.7e-20 101.7 159 35.8
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.0e-19 101.3 220 36.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.0e-19 101.3 213 31.0
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.3e-19 100.9 71 71.8
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.3e-19 100.9 122 38.5
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.7e-19 100.5 206 31.6
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.7e-19 100.5 159 32.7
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-19 100.5 159 35.8
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.7e-19 100.5 197 33.0
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.2e-19 100.1 153 35.9
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.9e-19 99.8 191 30.9
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.0e-19 99.0 187 35.3
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 5.0e-19 99.0 156 33.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 5.0e-19 99.0 142 34.5
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 6.5e-19 98.6 175 34.9
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 8.5e-19 98.2 128 38.3
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 8.5e-19 98.2 157 36.3
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 8.5e-19 98.2 163 34.4
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 8.5e-19 98.2 188 33.5
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 8.5e-19 98.2 139 35.3
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-18 97.8 211 31.3
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.1e-18 97.8 177 32.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.4e-18 97.4 160 36.2
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.4e-18 97.4 179 32.4
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 2.5e-18 96.7 155 32.3
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.5e-18 96.7 155 34.2
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.5e-18 96.7 164 31.1
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.2e-18 96.3 138 37.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 5.5e-18 95.5 194 29.9
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 5.5e-18 95.5 158 32.9
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 9.4e-18 94.7 118 35.6
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.2e-17 94.4 214 31.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.6e-17 94.0 177 31.6
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.7e-17 93.2 156 34.0
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.7e-17 93.2 212 29.7
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 3.6e-17 92.8 188 30.9
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 4.7e-17 92.4 218 31.2
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.7e-17 92.4 191 28.3
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 6.1e-17 92.0 191 28.3
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.1e-17 92.0 151 32.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.0e-16 91.3 142 33.8
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.3e-16 90.1 111 36.0
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.0e-16 89.7 147 42.9
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.9e-16 89.4 157 28.0
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.9e-16 89.4 213 27.7
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 5.1e-16 89.0 151 31.1
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 8.8e-16 88.2 146 34.2
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 8.8e-16 88.2 157 31.8
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 8.8e-16 88.2 148 40.5
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 8.8e-16 88.2 209 28.2
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.1e-15 87.8 189 28.6
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.1e-15 87.8 117 39.3
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.5e-15 87.4 146 36.3
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 5.7e-15 85.5 143 32.2
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 2.8e-14 83.2 159 30.2
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 3.7e-14 82.8 185 29.7
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.1e-13 79.3 134 39.6
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.1e-13 79.3 137 40.1
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 9.1e-13 78.2 175 28.6
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.6e-12 77.4 133 33.8
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.6e-12 76.6 133 33.8
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 3.5e-12 76.3 77 61.0
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.5e-12 75.9 146 40.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 7.7e-12 75.1 77 40.3
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.2e-11 73.6 95 50.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.8e-11 72.8 144 31.9
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 7.2e-10 68.6 209 26.8
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 2.7e-09 66.6 117 30.8
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 3.6e-09 66.2 202 26.7
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 8.0e-09 65.1 43 69.8
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.0e-08 63.2 116 30.2
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 2.6e-07 60.1 156 25.6
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 9.7e-07 58.2 77 35.1
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 9.7e-07 58.2 206 23.3
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 2.2e-06 57.0 152 28.3
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 3.7e-06 56.2 153 25.5


User provided reference genes

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