Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1933 Cannabis sativa HOM05D007569 ORTHO05D009268 4.4e-46 187.6 92 100.0
Prupe.6G240500 Prunus persica HOM05D007569 ORTHO05D009268 2.8e-16 88.6 92 46.7
Thecc.05G055900 Theobroma cacao HOM05D007569 ORTHO05D009268 2.2e-13 79.0 99 51.5
Duzib093G0005 Durio zibethinus HOM05D007569 ORTHO05D009268 3.7e-13 78.2 101 52.5
FAN05G3967 Fragaria x ananassa HOM05D007569 ORTHO05D009268 6.3e-13 77.4 102 49.0
RcHm_v2.0_Chr3g0469031 Rosa chinensis HOM05D007569 ORTHO05D009268 1.4e-12 76.3 100 49.0
COL.COLO4_27060 Corchorus olitorius HOM05D007569 ORTHO05D009268 1.8e-12 75.9 100 49.0
Gohir.A13G025100 Gossypium hirsutum HOM05D007569 ORTHO05D009268 2.4e-12 75.5 92 47.8
QL07p045078 Quercus lobata HOM05D007569 ORTHO05D009268 2.4e-12 75.5 85 49.4
Haze_20627 Corylus avellana HOM05D007569 ORTHO05D009268 2.0e-11 72.4 87 50.6
Dinv35729 Davidia involucrata HOM05D007569 ORTHO05D009268 3.5e-11 71.6 88 46.6
Gohir.D13G023800 Gossypium hirsutum HOM05D007569 ORTHO05D009268 4.5e-11 71.2 91 44.0
Ciclev10013224m.g Citrus clementina HOM05D007569 ORTHO05D009268 1.0e-10 70.1 88 51.1
FvH4_6g15530 Fragaria vesca HOM05D007569 ORTHO05D009268 1.7e-10 69.3 99 46.5
FAN14G4266 Fragaria x ananassa HOM05D007569 ORTHO05D009268 1.7e-10 69.3 99 46.5
Gorai.002G249500 Gossypium raimondii HOM05D007569 ORTHO05D009268 2.3e-10 68.9 89 44.9
Gohir.A01G216400 Gossypium hirsutum HOM05D007569 ORTHO05D009268 2.9e-10 68.6 89 43.8
Gorai.013G026900 Gossypium raimondii HOM05D007569 ORTHO05D009268 3.8e-10 68.2 91 42.9
CiPaw.09G178900 Carya illinoinensis HOM05D007569 ORTHO05D009268 5.0e-10 67.8 97 48.5
Gohir.D01G205200 Gossypium hirsutum HOM05D007569 ORTHO05D009268 8.6e-10 67.0 94 47.9
Medtr7g100860 Medicago truncatula HOM05D007569 ORTHO05D009268 1.1e-09 66.6 56 64.3
Sabra16G0093200 Salix brachista HOM05D007569 ORTHO05D009268 1.1e-09 66.6 88 45.5
GSVIVG01025645001 Vitis vinifera HOM05D007569 ORTHO05D009268 1.1e-09 66.6 83 45.8
MD04G1102400 Malus domestica HOM05D007569 ORTHO05D009268 3.3e-09 65.1 89 42.7
Potri.016G087000 Populus trichocarpa HOM05D007569 ORTHO05D009268 4.3e-09 64.7 87 42.5
Cc06_g03690 Coffea canephora HOM05D007569 ORTHO05D009268 5.6e-09 64.3 77 46.8
Lalb_Chr01g0018971 Lupinus albus HOM05D007569 ORTHO05D009268 9.5e-09 63.5 55 63.6
Manes.08G004500 Manihot esculenta HOM05D007569 ORTHO05D009268 9.5e-09 63.5 81 46.9
Peaxi162Scf00005g00394 Petunia axillaris HOM05D007569 ORTHO05D009268 2.1e-08 62.4 90 41.1
Psat3g044160 Pisum sativum HOM05D007569 ORTHO05D009268 2.1e-08 62.4 48 62.5
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 2.8e-08 62.0 62 50.0
MD12G1122100 Malus domestica HOM05D007569 ORTHO05D009268 3.6e-08 61.6 60 48.3
Nitab4.5_0003871g0030 Nicotiana tabacum HOM05D007569 ORTHO05D009268 3.6e-08 61.6 90 42.2
Solyc10g150149.1 Solanum lycopersicum HOM05D007569 ORTHO05D009268 3.6e-08 61.6 97 49.5
CiPaw.10G136400 Carya illinoinensis HOM05D007569 ORTHO05D009268 6.1e-08 60.8 88 45.5
Lalb_Chr25g0289201 Lupinus albus HOM05D007569 ORTHO05D009268 6.1e-08 60.8 55 61.8
Cpa.g.sc368.3 Carica papaya HOM05D007569 ORTHO05D009268 8.0e-08 60.5 88 45.5
CiPaw.10G136600 Carya illinoinensis HOM05D007569 ORTHO05D009268 8.0e-08 60.5 88 45.5
FAN02G0921 Fragaria x ananassa HOM05D000214 ORTHO05D009268 8.0e-08 60.5 71 49.3
PGR004G0018 Punica granatum HOM05D007569 ORTHO05D009268 1.0e-07 60.1 94 45.7
Aqoxy4G03229 Aquilegia oxysepala HOM05D007569 ORTHO05D009268 1.8e-07 59.3 72 44.4
Lj5g0021553 Lotus japonicus HOM05D007569 ORTHO05D009268 1.8e-07 59.3 91 42.9
Peaxi162Scf00472g00312 Petunia axillaris HOM05D007569 ORTHO05D009268 1.8e-07 59.3 90 40.0
Medtr1g066720 Medicago truncatula HOM05D007569 ORTHO05D009268 3.0e-07 58.5 50 58.0
Actinidia19698 Actinidia chinensis HOM05D007569 ORTHO05D009268 4.0e-07 58.2 88 44.3
PGSC0003DMG400001743 Solanum tuberosum HOM05D007569 ORTHO05D009268 4.0e-07 58.2 90 42.2
TWI74G0066 Tripterygium wilfordii HOM05D007569 ORTHO05D009268 4.0e-07 58.2 85 47.1
CSS0032625 Camellia sinensis var. sinensis HOM05D007569 ORTHO05D009268 5.2e-07 57.8 90 41.1
Potri.006G130400 Populus trichocarpa HOM05D007569 ORTHO05D009268 5.2e-07 57.8 80 42.5
Nitab4.5_0008568g0070 Nicotiana tabacum HOM05D007569 ORTHO05D009268 8.9e-07 57.0 69 47.8
Lsat_1_v5_gn_6_30260 Lactuca sativa HOM05D007569 ORTHO05D009268 1.2e-06 56.6 95 38.9
Solyc09g007480.3 Solanum lycopersicum HOM05D007569 ORTHO05D009268 1.5e-06 56.2 86 40.7
Sc07g0006270 Simmondsia chinensis HOM05D007569 ORTHO05D009268 2.6e-06 55.5 46 52.2
Nitab4.5_0006156g0030 Nicotiana tabacum HOM05D007569 ORTHO05D009268 3.4e-06 55.1 90 41.1
AL6G12400 Arabidopsis lyrata HOM05D007569 ORTHO05D009268 4.4e-06 54.7 54 51.9
AT5G03120 Arabidopsis thaliana HOM05D007569 ORTHO05D009268 5.7e-06 54.3 55 54.5
Glyma.10G050600 Glycine max HOM05D007569 ORTHO05D009268 9.8e-06 53.5 95 40.0
Oeu026850.1 Olea europaea HOM05D007569 ORTHO05D009268 9.8e-06 53.5 94 37.2


User provided reference genes

Program Settings