Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.1e-167 593.2 306 100.0
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 3.3e-106 389.0 288 71.2
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 5.2e-104 381.7 280 69.6
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.9e-101 373.2 294 67.3
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 2.1e-100 369.8 287 67.9
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 2.1e-100 369.8 252 73.4
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 2.7e-100 369.4 260 70.0
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.3e-99 367.1 278 69.4
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 3.0e-99 365.9 253 72.7
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 3.9e-99 365.5 303 65.7
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.5e-98 363.6 301 63.5
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.5e-98 362.8 250 72.0
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 4.3e-98 362.1 232 76.7
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 4.3e-98 362.1 240 72.5
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.2e-97 360.5 252 73.0
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 2.8e-97 359.4 242 73.1
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 4.7e-97 358.6 239 73.6
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 4.7e-97 358.6 288 65.3
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 6.2e-97 358.2 254 71.3
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 6.2e-97 358.2 302 64.2
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.4e-96 357.1 245 73.1
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.4e-96 356.3 300 63.0
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 3.1e-96 355.9 244 73.0
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 8.9e-96 354.4 229 76.0
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.2e-95 354.0 249 71.1
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.6e-95 352.8 307 61.2
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.4e-95 352.4 246 73.2
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.7e-94 350.1 294 63.9
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 3.8e-94 349.0 257 67.7
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 8.4e-94 347.8 237 73.8
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 8.4e-94 347.8 298 62.4
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 2.4e-93 346.3 274 65.3
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 2.1e-92 343.2 250 68.8
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 6.0e-92 341.7 240 72.1
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 1.7e-91 340.1 256 66.8
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.7e-91 340.1 292 62.7
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 3.0e-91 339.3 240 70.4
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 3.0e-91 339.3 302 63.6
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.5e-90 337.0 240 70.4
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.5e-90 337.0 296 63.9
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.9e-90 336.7 253 67.6
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 5.6e-90 335.1 267 66.3
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 5.6e-90 335.1 230 70.4
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 7.3e-90 334.7 248 69.4
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 9.6e-90 334.3 229 72.9
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.2e-89 334.0 275 61.1
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 2.1e-89 333.2 243 69.5
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 2.8e-89 332.8 287 61.0
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.8e-89 332.8 276 63.4
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.8e-89 332.8 300 60.7
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 3.6e-89 332.4 304 59.2
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.1e-89 331.3 253 64.4
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 1.4e-88 330.5 246 67.9
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 2.4e-88 329.7 279 62.4
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 3.1e-88 329.3 256 65.2
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 3.1e-88 329.3 287 60.6
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 6.9e-88 328.2 251 64.5
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 6.9e-88 328.2 246 67.5
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 9.0e-88 327.8 276 61.6
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.2e-87 327.4 245 67.3
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 2.0e-87 326.6 271 63.8
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 3.4e-87 325.9 258 63.6
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 3.4e-87 325.9 264 61.7
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 7.6e-87 324.7 224 70.1
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 9.9e-87 324.3 279 59.1
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 1.3e-86 323.9 236 68.2
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 1.3e-86 323.9 309 56.3
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.7e-86 323.6 230 68.7
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 1.7e-86 323.6 251 64.9
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.7e-86 323.6 227 69.6
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 1.7e-86 323.6 297 57.9
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 2.2e-86 323.2 258 62.4
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 3.8e-86 322.4 262 62.6
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 6.4e-86 321.6 256 62.9
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 1.1e-85 320.9 251 64.1
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.1e-85 320.9 204 77.5
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.4e-85 320.5 295 58.3
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.9e-85 320.1 251 64.5
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 4.2e-85 318.9 277 61.4
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 5.4e-85 318.5 246 66.3
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 1.0e-83 314.3 281 58.4
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 1.0e-83 314.3 275 61.8
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.3e-83 313.2 277 61.4
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.1e-82 310.8 293 58.0
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 1.9e-82 310.1 264 60.6
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 5.6e-82 308.5 336 53.6
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.8e-81 306.2 261 61.3
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.1e-80 304.3 282 62.1
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.4e-80 303.9 233 64.4
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.4e-80 303.9 266 60.5
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.4e-80 303.9 277 58.5
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.8e-80 303.5 266 60.5
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 2.4e-80 303.1 300 56.0
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.5e-79 300.4 281 58.4
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 5.8e-79 298.5 248 61.7
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 1.7e-78 297.0 252 59.1
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 2.2e-78 296.6 243 63.0
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 8.4e-78 294.7 252 60.3
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.4e-77 293.9 257 59.1
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.4e-77 293.1 243 62.1
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 7.1e-77 291.6 280 55.4
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 1.6e-76 290.4 256 59.0
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 2.1e-76 290.0 223 63.2
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.7e-76 289.7 250 59.2
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 3.5e-76 289.3 287 56.1
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 6.0e-76 288.5 262 57.3
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.9e-76 288.1 326 50.0
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.8e-75 287.0 307 52.1
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 5.1e-75 285.4 241 61.0
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 5.1e-75 285.4 238 64.7
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 7.4e-74 281.6 285 54.4
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.6e-73 280.4 201 68.7
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 6.2e-73 278.5 215 63.7
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.8e-70 269.2 215 65.1
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.7e-66 255.4 342 45.9
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.7e-66 255.4 277 51.6
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.6e-65 253.8 211 64.5
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 8.2e-65 251.5 219 58.4
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 8.2e-65 251.5 252 55.2
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.1e-64 251.1 270 54.4
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.4e-64 250.8 203 62.6
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 6.9e-64 248.4 144 81.2
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 5.8e-63 245.4 285 49.5
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.0e-62 244.6 251 55.4
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.3e-62 244.2 147 81.6
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.4e-61 240.7 163 70.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 1.3e-59 234.2 228 52.2
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.8e-59 233.8 288 46.9
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 6.7e-59 231.9 235 49.4
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 1.1e-56 224.6 140 77.1
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 5.3e-56 222.2 154 68.8
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 1.4e-53 214.2 154 68.2
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.1e-52 210.3 255 49.4
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.7e-47 191.8 160 60.0
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 1.3e-46 191.0 225 46.2
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-42 176.8 175 54.3
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 4.8e-41 172.6 183 49.7
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 9.1e-40 168.3 136 61.8
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.9e-37 160.6 163 50.3
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.5e-37 160.2 96 78.1
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 9.4e-37 158.3 129 62.0
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.6e-31 140.2 212 38.7
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 3.6e-28 129.8 96 65.6
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.7e-28 129.4 162 47.5
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 1.5e-26 124.4 165 50.9
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.3e-25 121.3 243 34.6
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 4.8e-25 119.4 85 68.2
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 6.5e-22 109.0 240 32.1
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 1.6e-20 104.4 109 53.2
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.0e-11 75.1 83 48.2
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.7e-06 57.8 162 29.6


User provided reference genes

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