Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 2661.3 1378 100.0
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1818.9 1369 70.3
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1811.2 1363 69.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1807.7 1374 69.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1806.6 1363 69.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1805.4 1363 69.6
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1713.7 1390 65.3
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1697.6 1398 65.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1674.1 1327 66.8
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1664.4 1355 65.1
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1658.7 1369 64.8
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1656.0 1356 64.8
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1637.1 1400 63.0
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1635.5 1206 71.1
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1589.3 1382 61.7
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1587.4 1365 62.6
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1561.6 1445 58.5
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1560.0 1374 60.7
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1549.6 1377 61.2
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1548.1 1344 61.8
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1547.7 1388 60.7
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1545.8 1368 61.0
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1537.7 1390 60.2
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1535.0 1384 59.6
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1527.3 1389 58.6
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1521.5 1378 60.7
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1518.8 1382 60.6
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1515.4 1456 58.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1514.2 1384 58.5
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1511.9 1387 59.7
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1510.4 1364 60.3
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1508.4 1373 59.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 1508.0 1379 60.0
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1505.0 1409 58.8
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1485.7 1368 59.6
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1484.2 1419 58.1
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1479.5 1403 58.5
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1470.3 1383 58.6
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1463.0 1388 57.0
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1460.7 1365 58.0
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1458.7 1373 57.2
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1455.3 1373 57.0
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1453.7 1378 55.4
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1448.0 1390 58.1
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1446.4 1381 58.0
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1444.1 1351 59.3
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1439.1 1327 59.5
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1434.5 1385 56.3
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1432.2 1375 55.7
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1429.8 1369 56.7
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1420.6 1357 56.9
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1417.1 1364 56.4
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1399.8 1369 55.7
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1397.9 1380 55.3
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1397.1 1398 54.4
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1385.5 1410 54.2
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1385.2 1419 54.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1382.5 1369 55.0
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1381.7 1372 55.2
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1379.4 1352 56.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1376.7 1381 55.6
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1374.8 1387 55.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1372.5 1370 55.4
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1372.1 1360 55.1
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1370.5 1370 54.9
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1367.4 1372 55.3
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1365.1 1374 55.5
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1358.6 1370 54.8
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1355.5 1362 54.7
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1348.2 1563 50.8
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1340.1 1491 51.7
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1324.7 1363 54.1
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1305.4 1379 51.6
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1279.2 1365 53.1
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1278.8 1613 48.4
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1275.4 1144 62.0
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 0.0e+00 1259.2 1004 67.2
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1198.3 1376 51.2
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 0.0e+00 1149.0 1009 63.0
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1141.3 1365 47.0
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 0.0e+00 1109.0 1111 55.4
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 0.0e+00 1091.3 1047 55.8
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 3.4e-304 1048.9 1159 50.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.4e-281 973.0 1054 52.5
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 9.1e-281 971.1 827 62.8
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 6.3e-266 921.8 1354 41.2
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.0e-263 914.4 838 57.8
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 4.1e-249 865.9 750 60.9
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 4.0e-236 822.8 721 60.3
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 3.4e-227 793.1 829 53.3
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 4.6e-208 729.6 1367 37.5
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 2.9e-186 657.1 1434 33.5
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 1.8e-175 621.3 1426 32.0
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.2e-170 604.4 607 56.5
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 9.1e-164 582.4 525 60.0
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 3.0e-159 567.4 444 68.7
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.2e-155 555.4 446 66.4
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.1e-153 548.9 540 55.2
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 2.1e-152 544.7 539 55.7
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.3e-138 498.8 663 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 2.5e-137 494.6 1017 34.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.2e-136 492.3 350 72.0
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 5.7e-134 483.4 399 64.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.2e-100 370.9 470 41.7
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 6.6e-98 363.6 354 58.5
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.9e-92 345.5 271 65.7
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 8.7e-90 336.7 476 44.3
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 7.9e-83 313.5 587 38.2
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 3.3e-81 308.1 861 32.4
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.8e-74 285.8 443 40.0
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 9.0e-71 273.5 389 43.2
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 3.6e-67 261.5 232 61.6
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.1e-63 248.4 360 44.2
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-62 246.1 164 75.6
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 5.5e-60 237.7 404 40.8
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 4.6e-59 234.6 232 57.8
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.3e-56 226.5 150 76.7
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.7e-56 224.9 138 80.4
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 1.9e-52 212.6 315 41.9
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 3.3e-49 201.8 220 52.3
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.1e-47 195.3 192 56.8
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 4.1e-47 194.9 139 72.7
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 5.5e-44 184.5 252 40.9
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-43 183.0 150 62.7
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 4.7e-43 181.4 1038 24.2
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 1.2e-38 166.8 169 55.0
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.6e-38 166.4 686 25.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 4.5e-38 164.9 363 33.9
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.2e-35 156.8 1233 22.8
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 3.4e-33 148.7 136 55.1
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 2.4e-31 142.5 212 46.7
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 3.5e-30 138.7 411 29.0
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 4.5e-30 138.3 139 51.8
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.3e-24 120.2 295 34.9
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.7e-24 119.8 199 41.7
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.8e-24 119.0 98 60.2
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.9e-24 118.2 596 25.2
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.9e-24 118.2 79 72.2
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 6.3e-24 117.9 170 44.1
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-23 116.7 106 62.3
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.3e-21 110.2 152 44.7
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.9e-21 109.0 210 38.6
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 7.3e-20 104.4 91 59.3
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.5e-17 96.7 151 45.0
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 2.0e-17 96.3 60 75.0
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 1.7e-16 93.2 100 43.0
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 2.2e-16 92.8 71 66.2
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 1.1e-15 90.5 89 55.1
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.4e-15 89.4 142 40.1
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.4e-15 88.2 119 42.0
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 1.2e-14 87.0 146 43.8
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.6e-14 86.7 95 43.2
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.7e-14 85.9 146 43.8
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-11 76.6 60 70.0
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 2.8e-11 75.9 109 47.7
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 6.2e-11 74.7 109 46.8
QL12p004446 Quercus lobata HOM05D004277 ORTHO05D050645 8.0e-11 74.3 68 55.9
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 7.5e-09 67.8 134 35.8
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 7.5e-09 67.8 73 50.7
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 7.5e-09 67.8 51 62.7
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 9.8e-09 67.4 135 37.0
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 4.9e-08 65.1 83 47.0
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 3.5e-06 58.9 105 41.0
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 6.0e-06 58.2 95 35.8
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 7.8e-06 57.8 79 45.6


User provided reference genes

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