Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 0.0e+00 1314.3 647 100.0
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 6.0e-283 977.2 651 71.1
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.1e-281 973.0 653 72.6
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 6.8e-279 963.8 644 72.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.2e-277 958.7 654 71.1
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 3.2e-276 954.9 650 70.2
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 6.8e-271 937.2 649 70.0
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 8.9e-271 936.8 681 67.0
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.9e-269 931.8 649 70.0
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 9.2e-268 926.8 646 70.1
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 7.8e-267 923.7 647 69.6
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 6.6e-266 920.6 649 70.1
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.8e-263 912.5 652 66.7
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.6e-259 899.4 647 66.0
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 7.8e-259 897.1 644 66.3
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.3e-258 895.6 643 67.3
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 6.6e-258 894.0 654 66.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 2.5e-257 892.1 652 65.5
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.3e-257 891.3 654 66.8
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 5.6e-257 891.0 655 65.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 7.3e-257 890.6 652 66.1
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 2.1e-256 889.0 643 67.3
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.0e-255 883.6 646 68.6
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 5.8e-254 880.9 643 66.1
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 7.6e-254 880.6 645 65.7
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.3e-253 879.8 643 65.6
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 1.3e-253 879.8 651 64.8
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.7e-253 879.4 652 65.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 2.2e-253 879.0 643 66.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.9e-253 877.9 652 65.5
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 2.4e-252 875.5 652 65.0
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 3.2e-252 875.2 644 65.5
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 9.3e-252 873.6 651 65.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.0e-250 870.2 651 65.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.3e-250 869.8 651 65.0
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 2.5e-249 865.5 645 65.0
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 5.6e-249 864.4 655 64.3
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 9.6e-249 863.6 649 65.3
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 6.2e-248 860.9 649 64.7
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 3.4e-246 855.1 653 63.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 4.5e-246 854.7 649 64.6
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.3e-245 853.2 649 64.4
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.7e-245 852.8 656 63.7
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 2.2e-245 852.4 647 64.9
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.9e-245 852.0 648 64.7
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.9e-245 852.0 648 64.7
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 9.3e-244 847.0 653 64.3
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 9.3e-244 847.0 647 62.6
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 4.6e-243 844.7 649 63.2
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.8e-242 842.8 647 65.1
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 5.1e-242 841.3 649 63.6
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 8.7e-242 840.5 610 65.6
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.3e-240 836.6 658 63.2
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.1e-239 833.6 646 63.3
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.4e-239 833.2 655 63.5
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.6e-238 828.9 646 63.3
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 9.9e-238 827.0 652 61.3
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.3e-237 826.6 650 62.2
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.9e-237 824.7 650 61.8
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 6.4e-237 824.3 623 65.5
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 9.3e-236 820.5 629 63.9
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.6e-235 819.7 661 62.0
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.3e-234 816.6 650 62.3
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.3e-234 815.8 650 61.4
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.1e-233 813.5 650 61.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.9e-233 812.8 654 61.8
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 3.3e-233 812.0 646 61.1
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 8.2e-232 807.4 652 60.9
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 6.9e-231 804.3 651 61.4
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.5e-230 803.1 659 60.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 2.6e-230 802.4 649 59.9
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 7.6e-230 800.8 537 70.0
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 7.6e-230 800.8 653 60.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.2e-227 793.5 650 60.3
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.2e-227 793.5 613 64.3
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.8e-226 789.6 649 60.1
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 8.7e-226 787.3 644 60.1
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.6e-224 783.1 657 59.8
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.2e-224 782.7 654 59.2
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.7e-221 773.1 676 59.2
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.4e-220 770.0 652 58.9
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 8.5e-213 744.2 645 56.6
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 8.8e-210 734.2 643 57.5
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 3.4e-206 722.2 574 60.6
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.3e-205 720.3 649 55.2
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 3.7e-200 702.2 641 55.5
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.3e-184 650.6 507 62.3
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.8e-184 649.4 586 55.5
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 3.3e-180 636.0 677 49.8
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.0e-178 630.9 485 64.5
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.2e-176 623.2 609 53.7
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.0e-174 616.7 571 57.1
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 4.7e-163 578.9 663 47.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 5.6e-156 555.4 593 51.1
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 2.3e-154 550.1 478 57.7
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 3.9e-149 532.7 650 45.2
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.2e-139 498.8 644 44.7
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 3.6e-131 473.0 627 42.4
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.1e-124 451.4 254 83.1
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 4.8e-123 446.0 539 46.0
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.3e-109 401.4 390 51.0
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.3e-104 384.8 360 52.8
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 6.3e-99 365.9 426 46.2
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 4.1e-98 363.2 642 37.7
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 3.3e-92 343.6 484 41.7
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 9.7e-92 342.0 178 87.6
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 2.2e-91 340.9 344 51.5
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 2.6e-89 334.0 292 59.2
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.2e-78 298.5 197 73.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 4.1e-74 283.5 281 51.2
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 9.8e-60 235.7 215 54.0
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 4.3e-55 220.3 170 64.7
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.4e-53 215.3 104 92.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 7.5e-52 209.5 106 86.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 4.4e-36 157.1 497 29.2
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.9e-35 154.5 137 57.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 2.9e-35 154.5 200 41.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 9.2e-34 149.4 189 42.9
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.4e-28 131.0 154 47.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 4.9e-27 127.1 68 83.8
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.1e-25 121.7 59 83.1
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.0e-24 117.9 83 67.5
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.9e-24 117.5 74 71.6
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.3e-21 107.1 105 48.6
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 7.1e-18 96.7 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.5e-15 89.0 79 55.7
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 2.5e-15 88.2 79 55.7
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 79 55.7
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 3.3e-15 87.8 79 54.4
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.6e-14 85.5 79 53.2
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.1e-13 82.8 79 53.2
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.2e-11 75.1 95 45.3
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.4e-10 72.4 75 54.7
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.4e-10 72.4 75 53.3
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 5.5e-10 70.5 143 38.5
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 9.3e-10 69.7 95 41.1
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 1.6e-09 68.9 118 31.4


User provided reference genes

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