Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 6.5e-82 307.4 158 100.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 3.3e-62 241.9 136 91.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.7e-53 213.0 150 72.0
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 2.8e-53 212.2 134 79.9
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.8e-53 212.2 150 72.0
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 2.4e-52 209.1 135 78.5
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 3.1e-52 208.8 150 71.3
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 4.1e-52 208.4 134 79.1
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 5.3e-52 208.0 135 77.0
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 7.0e-52 207.6 135 77.0
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 3.5e-51 205.3 135 77.0
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 5.9e-51 204.5 164 66.5
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 5.9e-51 204.5 135 74.1
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 5.9e-51 204.5 134 75.4
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 7.7e-51 204.1 135 76.3
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 1.0e-50 203.8 134 76.1
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 1.0e-50 203.8 135 76.3
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 1.0e-50 203.8 135 75.6
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 1.0e-50 203.8 135 74.8
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.3e-50 203.4 136 75.0
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 1.7e-50 203.0 135 75.6
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 1.7e-50 203.0 135 75.6
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 1.7e-50 203.0 135 75.6
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 2.2e-50 202.6 134 76.1
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 2.9e-50 202.2 135 75.6
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 3.8e-50 201.8 135 74.1
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 5.0e-50 201.4 138 71.7
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 5.0e-50 201.4 135 74.1
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 6.5e-50 201.1 135 74.1
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 1.1e-49 200.3 138 72.5
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 1.1e-49 200.3 136 74.3
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 1.1e-49 200.3 135 74.1
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 1.1e-49 200.3 135 74.1
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 1.1e-49 200.3 135 72.6
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 1.5e-49 199.9 136 72.8
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.5e-49 199.9 136 72.8
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.5e-49 199.9 134 74.6
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 1.9e-49 199.5 136 72.1
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.5e-49 199.1 135 72.6
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 2.5e-49 199.1 136 71.3
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.2e-49 198.7 134 75.4
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 3.2e-49 198.7 135 73.3
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 3.2e-49 198.7 135 73.3
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 3.2e-49 198.7 135 74.1
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 3.2e-49 198.7 136 72.1
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 4.2e-49 198.4 134 72.4
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 4.2e-49 198.4 134 75.4
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 5.5e-49 198.0 134 72.4
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 9.4e-49 197.2 137 74.5
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 9.4e-49 197.2 137 74.5
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.2e-48 196.8 134 73.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 2.7e-48 195.7 135 71.9
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.7e-48 195.7 135 69.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.6e-48 195.3 135 68.9
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 4.7e-48 194.9 134 73.1
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 4.7e-48 194.9 134 73.9
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.7e-48 194.9 139 71.9
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 4.7e-48 194.9 135 68.9
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 4.7e-48 194.9 134 73.1
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 6.1e-48 194.5 134 73.1
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 1.0e-47 193.7 134 71.6
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 1.0e-47 193.7 135 70.4
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 1.4e-47 193.4 140 70.7
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.8e-47 193.0 160 62.5
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.8e-47 193.0 136 70.6
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 2.3e-47 192.6 135 70.4
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 5.2e-47 191.4 135 70.4
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.8e-47 191.0 134 68.7
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 8.8e-47 190.7 134 68.7
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 1.5e-46 189.9 134 72.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 2.6e-46 189.1 135 68.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.6e-46 189.1 131 71.0
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 2.6e-46 189.1 134 70.9
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 2.6e-46 189.1 134 70.9
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 2.6e-46 189.1 134 70.9
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 3.4e-46 188.7 135 71.9
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 3.4e-46 188.7 135 68.9
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 4.4e-46 188.3 134 69.4
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 4.4e-46 188.3 135 71.9
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 4.4e-46 188.3 135 69.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.3e-45 186.8 135 68.1
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.3e-45 186.8 135 68.1
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.3e-45 186.8 134 67.9
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 1.7e-45 186.4 135 68.1
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 1.7e-45 186.4 135 68.9
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 2.2e-45 186.0 134 69.4
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 2.2e-45 186.0 134 68.7
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 2.8e-45 185.7 139 66.2
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 2.8e-45 185.7 135 66.7
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 3.7e-45 185.3 135 66.7
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 4.8e-45 184.9 134 67.9
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 4.8e-45 184.9 139 65.5
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 6.3e-45 184.5 135 65.9
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 8.3e-45 184.1 135 68.9
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 1.4e-44 183.3 139 64.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 1.4e-44 183.3 167 60.5
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.8e-44 183.0 139 65.5
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.8e-44 183.0 135 70.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 4.1e-44 181.8 133 67.7
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 7.0e-44 181.0 139 64.7
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 7.0e-44 181.0 132 66.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 9.1e-44 180.6 139 64.7
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 9.1e-44 180.6 135 65.2
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.2e-43 180.3 134 65.7
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 1.6e-43 179.9 134 66.4
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 2.7e-43 179.1 135 66.7
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 5.9e-43 177.9 139 64.0
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 5.9e-43 177.9 139 64.0
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 1.0e-42 177.2 139 63.3
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 1.0e-42 177.2 134 65.7
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 2.2e-42 176.0 137 66.4
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 2.9e-42 175.6 139 62.6
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.9e-42 175.6 139 62.6
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 6.5e-42 174.5 139 61.9
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 6.5e-42 174.5 139 61.9
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 6.5e-42 174.5 139 61.9
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.1e-41 173.7 134 61.2
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 1.5e-41 173.3 134 64.9
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.2e-41 171.0 135 60.0
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.6e-40 169.9 134 63.4
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.1e-40 169.5 134 60.4
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 2.7e-40 169.1 165 55.8
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 1.4e-39 166.8 132 59.8
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 2.3e-39 166.0 134 60.4
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 5.2e-39 164.9 142 60.6
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 9.8e-38 160.6 108 76.9
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 4.0e-31 138.7 113 61.9
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.5e-30 136.7 80 81.2
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.9e-29 132.5 84 77.4
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 2.8e-24 115.9 134 42.5
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.0e-24 114.4 74 73.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.0e-24 114.4 74 73.0
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 5.8e-22 108.2 134 45.5
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 5.8e-22 108.2 137 43.8
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.3e-21 107.1 134 41.0
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 2.0e-19 99.8 137 43.8
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.1e-15 87.4 135 34.1
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 1.5e-14 83.6 134 41.8
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 2.0e-14 83.2 72 59.7
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 6.4e-13 78.2 69 55.1
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 1.0e-10 70.9 56 64.3
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.3e-10 70.5 52 67.3
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 2.3e-10 69.7 70 48.6


User provided reference genes

Program Settings