Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 5.6e-127 457.6 227 100.0
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 4.6e-65 251.9 209 64.1
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 7.4e-63 244.6 209 61.7
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.3e-62 243.8 203 62.1
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 4.8e-62 241.9 204 60.3
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 3.1e-61 239.2 220 59.5
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 4.5e-60 235.3 205 62.4
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 5.9e-60 235.0 193 62.7
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 5.9e-60 235.0 196 59.7
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 1.0e-59 234.2 207 60.9
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 2.9e-59 232.6 216 59.3
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 4.2e-58 228.8 208 58.2
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 4.2e-58 228.8 180 65.6
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 4.2e-58 228.8 197 61.9
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 3.6e-57 225.7 206 58.3
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 1.0e-56 224.2 195 59.0
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 1.4e-56 223.8 146 72.6
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 2.3e-56 223.0 203 60.6
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 2.3e-56 223.0 203 59.6
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 2.3e-56 223.0 201 62.7
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 3.0e-56 222.6 202 60.4
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 5.1e-56 221.9 193 60.1
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 6.7e-56 221.5 148 72.3
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.1e-55 220.7 218 55.5
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 1.1e-55 220.7 205 60.5
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 2.5e-55 219.5 220 55.0
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 3.3e-55 219.2 202 58.9
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 3.3e-55 219.2 163 66.3
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 4.3e-55 218.8 205 57.6
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 4.3e-55 218.8 210 58.1
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 5.7e-55 218.4 203 57.6
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 2.2e-54 216.5 203 57.6
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.7e-54 215.7 149 69.8
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 4.8e-54 215.3 205 57.6
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 1.1e-53 214.2 218 54.1
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 1.1e-53 214.2 206 57.8
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 2.0e-52 209.9 205 58.5
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 2.6e-52 209.5 143 71.3
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 2.6e-52 209.5 198 57.6
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 4.5e-52 208.8 192 59.4
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 5.9e-52 208.4 128 74.2
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 7.7e-52 208.0 159 64.8
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 7.7e-52 208.0 203 55.2
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.7e-51 206.8 132 72.0
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 2.2e-51 206.5 123 76.4
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 2.9e-51 206.1 175 57.1
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 3.8e-51 205.7 138 71.0
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 5.0e-51 205.3 164 61.0
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 6.5e-51 204.9 132 72.0
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 8.5e-51 204.5 174 58.6
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 1.4e-50 203.8 166 58.4
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 1.4e-50 203.8 175 60.0
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 3.2e-50 202.6 192 58.3
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 5.5e-50 201.8 205 56.1
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 5.5e-50 201.8 155 60.6
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 5.5e-50 201.8 155 61.3
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 7.2e-50 201.4 132 73.5
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 7.2e-50 201.4 178 57.9
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 9.4e-50 201.1 188 59.0
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.6e-49 200.3 173 59.5
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 2.1e-49 199.9 155 61.3
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 2.1e-49 199.9 155 60.0
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 2.7e-49 199.5 146 67.1
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 3.6e-49 199.1 178 59.0
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 7.9e-49 198.0 178 57.3
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 2.3e-48 196.4 155 60.6
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 2.3e-48 196.4 155 60.0
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 3.0e-48 196.1 155 59.4
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 3.0e-48 196.1 155 59.4
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 3.0e-48 196.1 155 59.4
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 5.1e-48 195.3 155 59.4
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 5.1e-48 195.3 155 59.4
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 2.0e-47 193.4 159 57.9
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 2.0e-47 193.4 139 65.5
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 2.6e-47 193.0 148 64.9
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 3.3e-47 192.6 193 57.5
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 3.3e-47 192.6 165 58.2
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 3.3e-47 192.6 142 64.8
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 5.7e-47 191.8 178 56.2
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 2.8e-46 189.5 156 60.3
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 2.8e-46 189.5 131 67.9
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.4e-45 187.2 141 62.4
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 3.1e-45 186.0 196 51.0
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.7e-43 180.3 129 67.4
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 3.8e-43 179.1 116 69.8
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.9e-42 176.8 148 55.4
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 7.2e-42 174.9 104 76.0
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 8.0e-41 171.4 177 49.2
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 2.3e-40 169.9 168 50.6
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 9.7e-39 164.5 134 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.7e-38 163.7 150 53.3
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.7e-33 146.4 95 72.6
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 2.2e-30 136.7 92 66.3
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 1.0e-27 127.9 170 41.8
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 2.2e-27 126.7 126 47.6
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.0e-23 113.6 117 54.7
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 7.5e-23 111.7 77 66.2
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 1.2e-20 104.4 79 58.2
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 3.5e-20 102.8 70 67.1
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 5.9e-20 102.1 68 66.2
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.3e-19 100.9 74 62.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 2.3e-19 100.1 145 47.6
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.9e-18 97.1 65 67.7
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 9.8e-15 84.7 163 36.2
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 4.9e-14 82.4 75 50.7
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-13 80.5 196 29.1
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.8e-13 80.5 160 30.6
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.4e-13 80.1 179 31.3
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.2e-13 79.7 179 31.3
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.2e-13 79.7 179 33.0
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 9.2e-13 78.2 69 53.6
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 9.2e-13 78.2 127 36.2
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 9.2e-13 78.2 71 57.7
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 1.6e-12 77.4 64 59.4
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.5e-12 76.3 127 35.4
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 4.6e-12 75.9 178 32.0
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 1.3e-11 74.3 64 57.8
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.7e-11 73.9 206 30.6
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.3e-11 73.6 200 28.5
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.9e-11 72.8 203 29.1
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 5.0e-11 72.4 168 31.5
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 1.1e-10 71.2 72 48.6
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 6.2e-09 65.5 200 30.5
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 3.4e-07 59.7 81 40.7
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 6.4e-06 55.5 134 28.4
Pp3c5_12950 Physcomitrium patens HOM05D006847 ORTHO05D008685 6.4e-06 55.5 80 40.0
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 8.3e-06 55.1 100 35.0


User provided reference genes

Program Settings