Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 2.2e-147 525.8 300 100.0
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 9.7e-103 377.5 305 72.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 4.8e-102 375.2 304 76.3
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.2e-99 366.3 306 69.6
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.9e-99 365.9 306 69.6
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.8e-99 365.5 303 68.3
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.8e-99 365.5 303 68.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.5e-99 364.8 302 64.9
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 6.5e-99 364.8 305 69.2
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.1e-98 364.0 300 70.7
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.4e-98 363.6 300 76.3
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 2.5e-98 362.8 308 70.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 3.2e-98 362.5 300 71.0
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 5.5e-98 361.7 299 71.6
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.7e-97 359.4 301 75.7
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 6.1e-97 358.2 300 75.3
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 6.1e-97 358.2 300 69.3
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.0e-96 355.9 300 69.0
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 8.8e-96 354.4 300 74.3
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 8.8e-96 354.4 313 68.1
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 2.0e-95 353.2 298 74.5
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 2.5e-95 352.8 216 80.1
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.5e-95 352.8 301 72.1
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.5e-95 352.8 306 72.2
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 4.3e-95 352.1 298 69.1
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 5.7e-95 351.7 293 68.3
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.7e-94 350.1 303 65.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.1e-93 347.4 215 81.9
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.4e-93 347.1 302 70.2
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.8e-93 346.7 305 66.2
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.8e-93 346.7 327 63.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.1e-93 345.9 313 66.5
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 6.9e-93 344.7 307 68.7
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 6.9e-93 344.7 302 70.5
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 1.5e-92 343.6 312 60.6
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.5e-92 343.6 296 70.3
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.0e-92 343.2 299 73.9
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 3.4e-92 342.4 302 70.2
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 4.5e-92 342.0 300 68.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 4.5e-92 342.0 215 78.1
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.3e-91 340.5 213 79.3
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.3e-91 340.5 213 79.3
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 2.9e-91 339.3 215 79.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 2.9e-91 339.3 304 65.1
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 3.8e-91 339.0 299 70.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.8e-91 339.0 299 70.9
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 6.5e-91 338.2 213 85.0
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 8.5e-91 337.8 213 85.4
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.9e-90 336.7 212 82.5
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.5e-90 336.3 208 85.1
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.2e-90 335.9 299 70.6
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.2e-90 335.5 213 77.9
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 4.2e-90 335.5 306 71.9
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 7.2e-90 334.7 213 78.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.2e-90 334.7 295 61.4
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.2e-89 334.0 304 65.8
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 2.1e-89 333.2 324 63.9
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.7e-89 332.0 297 65.7
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 6.1e-89 331.6 308 59.7
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.3e-88 329.7 213 82.6
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.1e-88 328.6 215 77.2
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.3e-86 323.9 215 81.9
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.3e-86 323.9 212 76.4
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 2.2e-86 323.2 248 70.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 6.3e-86 321.6 211 81.5
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 6.3e-86 321.6 300 65.7
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.4e-85 320.5 300 67.7
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 2.4e-85 319.7 214 79.9
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 4.1e-85 318.9 209 80.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 4.1e-85 318.9 213 72.8
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.3e-85 318.5 196 80.6
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 5.3e-85 318.5 216 79.2
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 3.8e-83 312.4 210 76.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 3.8e-83 312.4 292 59.6
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 2.5e-82 309.7 214 77.6
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 9.4e-82 307.8 249 62.2
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.6e-81 307.0 303 60.1
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.6e-81 305.8 302 58.3
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 4.7e-81 305.4 213 76.5
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.0e-80 304.3 210 80.0
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.8e-80 303.5 214 72.0
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.1e-79 300.8 216 68.1
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.3e-78 297.4 319 60.8
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.4e-77 293.1 215 67.9
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 3.1e-77 292.7 214 70.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 4.1e-77 292.4 267 62.5
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 5.3e-77 292.0 264 72.0
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.0e-76 290.0 180 80.6
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 2.7e-76 289.7 213 67.6
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.9e-76 288.5 192 75.0
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.9e-76 288.5 263 66.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.7e-75 287.0 204 77.0
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 8.5e-75 284.6 208 73.6
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.1e-74 284.3 215 73.5
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.4e-72 277.3 189 74.6
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 8.8e-72 274.6 265 57.0
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.5e-71 273.9 215 65.1
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 3.4e-71 272.7 211 64.5
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.8e-70 269.6 320 52.2
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 3.1e-69 266.2 146 85.6
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 3.1e-69 266.2 237 69.6
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.0e-68 263.5 258 55.8
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.1e-65 251.9 217 65.0
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 2.5e-58 229.9 231 67.5
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 9.8e-55 218.0 120 85.0
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 8.0e-49 198.4 205 56.1
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.8e-44 181.8 192 54.7
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.0e-43 181.4 123 73.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.0e-31 140.6 176 42.0
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.8e-30 136.3 204 44.6
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.4e-29 134.4 176 59.7
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.0e-27 128.3 90 76.7
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 3.9e-27 126.3 89 76.4
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.9e-26 124.0 179 43.6
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 3.3e-26 123.2 104 63.5
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 6.9e-24 115.5 65 83.1
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 2.4e-21 107.1 95 61.1
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.7e-19 98.6 77 64.9
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.6e-17 93.2 133 37.6
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.1e-16 91.7 129 49.6
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 2.6e-15 87.0 55 76.4
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 6.4e-14 82.4 57 75.4
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.4e-14 82.4 107 40.2
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.8e-09 66.2 189 29.1
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 1.1e-08 65.1 53 67.9
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.8e-08 64.3 202 29.2
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.4e-08 63.9 138 31.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 9.0e-08 62.0 137 32.8
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 1.2e-07 61.6 113 41.6
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.0e-07 60.8 141 32.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 9.9e-07 58.5 136 29.4
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.7e-06 57.8 134 29.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.7e-06 57.8 136 30.9
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-06 57.4 156 32.7
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.9e-06 57.0 141 33.3
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.8e-06 56.6 112 34.8
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.8e-06 56.6 134 29.9
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 4.9e-06 56.2 30 83.3


User provided reference genes

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