Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1756 Cannabis sativa HOM05D007026 ORTHO05D008493 1.3e-147 526.6 298 100.0
TWI09G0295 Tripterygium wilfordii HOM05D007026 ORTHO05D008493 1.7e-62 243.8 223 58.7
Cfa010744 Carpinus fangiana HOM05D007026 ORTHO05D008493 1.8e-61 240.4 175 70.9
Thecc.01G412700 Theobroma cacao HOM05D007026 ORTHO05D008493 2.4e-61 240.0 241 55.6
Medtr8g036520 Medicago truncatula HOM05D007026 ORTHO05D008493 7.0e-61 238.4 261 53.6
RcHm_v2.0_Chr1g0315651 Rosa chinensis HOM05D007026 ORTHO05D008493 4.5e-60 235.7 250 57.6
Rhsim01G0130400 Rhododendron simsii HOM05D007026 ORTHO05D008493 1.3e-59 234.2 203 60.6
MD07G1007900 Malus domestica HOM05D007026 ORTHO05D008493 1.7e-59 233.8 162 74.1
Lalb_Chr03g0033971 Lupinus albus HOM05D007026 ORTHO05D008493 3.8e-59 232.6 183 66.7
FAN03G2284 Fragaria x ananassa HOM05D007026 ORTHO05D008493 8.5e-59 231.5 306 48.4
Prupe.2G010600 Prunus persica HOM05D007026 ORTHO05D008493 1.1e-58 231.1 254 54.7
vmacro21182 Vaccinium macrocarpon HOM05D007026 ORTHO05D008493 3.2e-58 229.6 224 55.8
QL04p005492 Quercus lobata HOM05D007026 ORTHO05D008493 4.2e-58 229.2 195 64.1
FAN06G1399 Fragaria x ananassa HOM05D007026 ORTHO05D008493 1.2e-57 227.6 238 56.7
Manes.10G145400 Manihot esculenta HOM05D007026 ORTHO05D008493 2.1e-57 226.9 211 58.3
Nn2g15423 Nelumbo nucifera HOM05D007026 ORTHO05D008493 2.7e-57 226.5 177 66.7
Psat4g148320 Pisum sativum HOM05D007026 ORTHO05D008493 2.7e-57 226.5 268 50.7
Actinidia21558 Actinidia chinensis HOM05D007026 ORTHO05D008493 4.7e-57 225.7 170 67.6
FAN10G3680 Fragaria x ananassa HOM05D007026 ORTHO05D008493 4.7e-57 225.7 239 57.3
Sabra09G0047000 Salix brachista HOM05D007026 ORTHO05D008493 4.7e-57 225.7 179 65.4
Atru.chr11.2644 Acer truncatum HOM05D007026 ORTHO05D008493 8.0e-57 224.9 282 50.7
CSS0028033 Camellia sinensis var. sinensis HOM05D007026 ORTHO05D008493 1.0e-56 224.6 272 50.7
Potri.001G269000 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.4e-56 224.2 176 65.3
Potri.009G063700 Populus trichocarpa HOM05D007026 ORTHO05D008493 1.4e-56 224.2 216 57.9
Hma1.2p1_0293F.1_g116330 Hydrangea macrophylla HOM05D007026 ORTHO05D008493 1.8e-56 223.8 294 48.6
Haze_03229 Corylus avellana HOM05D007026 ORTHO05D008493 8.8e-56 221.5 153 73.2
PGR044G0728 Punica granatum HOM05D007026 ORTHO05D008493 1.1e-55 221.1 153 70.6
TAR623G0027 Trochodendron aralioides HOM05D007026 ORTHO05D008493 1.5e-55 220.7 291 48.1
TAR623G1735 Trochodendron aralioides HOM05D007026 ORTHO05D008493 2.0e-55 220.3 291 48.1
Peaxi162Scf00428g00077 Petunia axillaris HOM05D007026 ORTHO05D008493 3.3e-55 219.5 257 51.4
MELO3C023538.2 Cucumis melo HOM05D007026 ORTHO05D008493 1.3e-54 217.6 276 49.3
Ciclev10032288m.g Citrus clementina HOM05D007026 ORTHO05D008493 2.8e-54 216.5 245 51.0
CsaV3_7G031200 Cucumis sativus L. HOM05D007026 ORTHO05D008493 2.8e-54 216.5 207 58.0
Cpa.g.sc245.8 Carica papaya HOM05D007026 ORTHO05D008493 6.3e-54 215.3 226 54.0
Cc02_g27730 Coffea canephora HOM05D007026 ORTHO05D008493 1.1e-53 214.5 186 59.1
arahy.Tifrunner.gnm1.ann1.VL74DI Arachis hypogaea HOM05D007026 ORTHO05D008493 1.4e-53 214.2 188 59.6
Sopen03g034460 Solanum pennellii HOM05D007026 ORTHO05D008493 3.1e-53 213.0 261 48.7
PGSC0003DMG400024551 Solanum tuberosum HOM05D007026 ORTHO05D008493 3.1e-53 213.0 259 49.0
Solyc03g115460.3 Solanum lycopersicum HOM05D007026 ORTHO05D008493 7.0e-53 211.8 261 47.9
Duzib268G1513 Durio zibethinus HOM05D007026 ORTHO05D008493 1.2e-52 211.1 196 56.6
Lj3g0000564 Lotus japonicus HOM05D007026 ORTHO05D008493 1.6e-52 210.7 143 70.6
Sc11g0009270 Simmondsia chinensis HOM05D007026 ORTHO05D008493 4.5e-52 209.1 186 57.5
ClCG09G004280 Citrullus lanatus HOM05D007026 ORTHO05D008493 7.7e-52 208.4 244 52.0
MD02G1314200 Malus domestica HOM05D007026 ORTHO05D008493 7.7e-52 208.4 184 63.0
THA.LOC104826673 Tarenaya hassleriana HOM05D007026 ORTHO05D008493 1.0e-51 208.0 171 63.2
Gohir.D08G166400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 1.5e-50 204.1 255 49.4
MSTRG.28077 Avicennia marina HOM05D007026 ORTHO05D008493 2.5e-50 203.4 168 62.5
Gorai.004G173800 Gossypium raimondii HOM05D007026 ORTHO05D008493 2.5e-50 203.4 255 49.4
Nitab4.5_0002881g0080 Nicotiana tabacum HOM05D007026 ORTHO05D008493 3.2e-50 203.0 264 46.2
SGA_v2.0_scaffold4G02258 Striga asiatica HOM05D007026 ORTHO05D008493 1.6e-49 200.7 232 52.2
Phvul.011G212500 Phaseolus vulgaris HOM05D007026 ORTHO05D008493 1.8e-48 197.2 203 54.7
VMungo1127G0427 Vigna mungo HOM05D007026 ORTHO05D008493 1.8e-48 197.2 180 58.3
Glyma.13G204000 Glycine max HOM05D007026 ORTHO05D008493 5.2e-48 195.7 144 68.8
BcaC01g04025 Brassica carinata HOM05D007026 ORTHO05D008493 1.5e-47 194.1 223 51.6
C03p45790 Brassica napus HOM05D007026 ORTHO05D008493 1.5e-47 194.1 223 51.6
BolC3t16854H Brassica oleracea HOM05D007026 ORTHO05D008493 1.5e-47 194.1 223 51.6
COL.COLO4_23920 Corchorus olitorius HOM05D007026 ORTHO05D008493 2.0e-47 193.7 167 61.7
DCAR_029660 Daucus carota HOM05D007026 ORTHO05D008493 2.0e-47 193.7 158 61.4
Lj7P569T60 Lonicera japonica HOM05D007026 ORTHO05D008493 2.6e-47 193.4 163 61.3
Aqoxy1G00217 Aquilegia oxysepala HOM05D007026 ORTHO05D008493 5.7e-47 192.2 286 44.4
Migut.A00762 Erythranthe guttata HOM05D007026 ORTHO05D008493 1.7e-46 190.7 179 56.4
A03p37740 Brassica napus HOM05D007026 ORTHO05D008493 2.8e-46 189.9 223 50.7
BraA03t12929Z Brassica rapa HOM05D007026 ORTHO05D008493 2.8e-46 189.9 223 50.7
unitig_0.g1578 Utricularia gibba HOM05D007026 ORTHO05D008493 4.8e-46 189.1 175 58.3
ECA248G3415 Erigeron canadensis HOM05D007026 ORTHO05D008493 2.4e-45 186.8 259 46.7
Nitab4.5_0005198g0030 Nicotiana tabacum HOM05D007026 ORTHO05D008493 7.0e-45 185.3 156 62.2
SHI26926 Sapria himalayana HOM05D007026 ORTHO05D008493 7.0e-45 185.3 172 61.6
Lsat_1_v5_gn_1_108360 Lactuca sativa HOM05D007026 ORTHO05D008493 9.1e-45 184.9 264 45.8
CARHR087160 Cardamine hirsuta HOM05D007026 ORTHO05D008493 1.6e-44 184.1 263 44.9
PSO339G4493 Papaver somniferum HOM05D007026 ORTHO05D008493 2.7e-44 183.3 175 54.9
Sed0012425 Sechium edule HOM05D007026 ORTHO05D008493 3.5e-44 183.0 255 46.7
Carub.0003s1200 Capsella rubella HOM05D007026 ORTHO05D008493 5.9e-44 182.2 253 47.8
Migut.N01474 Erythranthe guttata HOM05D007026 ORTHO05D008493 5.9e-44 182.2 212 51.4
AL3G24320 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 2.2e-43 180.3 255 47.8
BcaB04g18713 Brassica carinata HOM05D007026 ORTHO05D008493 2.2e-43 180.3 219 48.4
ATR0605G064 Amborella trichopoda HOM05D007026 ORTHO05D008493 2.9e-43 179.9 192 52.6
MBI01_g27619_MAGBIO Magnolia biondii HOM05D007026 ORTHO05D008493 3.8e-43 179.5 175 57.1
FvH4_7g00860 Fragaria vesca HOM05D007026 ORTHO05D008493 1.1e-42 177.9 206 54.4
BcaB06g25527 Brassica carinata HOM05D007026 ORTHO05D008493 3.2e-42 176.4 191 52.9
Sp3g10790 Schrenkiella parvula HOM05D007026 ORTHO05D008493 3.2e-42 176.4 251 46.6
Thhalv10021417m.g Eutrema salsugineum HOM05D007026 ORTHO05D008493 1.2e-41 174.5 194 51.0
AT3G12650 Arabidopsis thaliana HOM05D007026 ORTHO05D008493 1.6e-41 174.1 254 46.1
Aa31LG3G20 Aethionema arabicum HOM05D007026 ORTHO05D008493 3.6e-41 172.9 225 48.0
HanXRQChr06g0185391 Helianthus annuus HOM05D007026 ORTHO05D008493 3.6e-41 172.9 251 43.8
A05p36850 Brassica napus HOM05D007026 ORTHO05D008493 8.0e-41 171.8 213 48.8
BraA05t22486Z Brassica rapa HOM05D007026 ORTHO05D008493 1.8e-40 170.6 213 47.9
Actinidia20675 Actinidia chinensis HOM05D007026 ORTHO05D008493 2.3e-40 170.2 133 65.4
RcHm_v2.0_Chr1g0315191 Rosa chinensis HOM05D007026 ORTHO05D008493 4.0e-40 169.5 116 73.3
RcHm_v2.0_Chr1g0315371 Rosa chinensis HOM05D007026 ORTHO05D008493 1.2e-39 167.9 116 72.4
Dinv09365 Davidia involucrata HOM05D007026 ORTHO05D008493 3.4e-39 166.4 259 43.2
RcHm_v2.0_Chr1g0315521 Rosa chinensis HOM05D007026 ORTHO05D008493 3.4e-39 166.4 116 72.4
HPP92_022795 Vanilla planifolia HOM05D007026 ORTHO05D008493 2.8e-38 163.3 184 50.0
Dinv43456 Davidia involucrata HOM05D007026 ORTHO05D008493 8.3e-38 161.8 195 47.7
RcHm_v2.0_Chr1g0315011 Rosa chinensis HOM05D007026 ORTHO05D008493 1.8e-37 160.6 116 71.6
Eucgr.J01262 Eucalyptus grandis HOM05D007026 ORTHO05D008493 3.8e-35 152.9 113 69.0
Gohir.A08G145400 Gossypium hirsutum HOM05D007026 ORTHO05D008493 8.6e-35 151.8 245 44.1
PSO384G4663 Papaver somniferum HOM05D007026 ORTHO05D008493 8.9e-32 141.7 135 56.3
BcaC05g29251 Brassica carinata HOM05D007026 ORTHO05D008493 7.5e-31 138.7 159 51.6
BolC5t34196H Brassica oleracea HOM05D007026 ORTHO05D008493 7.5e-31 138.7 114 64.0
EL10Ac2g04312 Beta vulgaris HOM05D007026 ORTHO05D008493 9.8e-31 138.3 157 47.8
Zm00001eb189290 Zea mays HOM05D007026 ORTHO05D008493 1.7e-30 137.5 188 43.1
Os02g0718000 Oryza sativa ssp. japonica HOM05D007026 ORTHO05D008493 1.1e-29 134.8 189 43.4
BcaB08g35591 Brassica carinata HOM05D007026 ORTHO05D008493 4.7e-25 119.4 142 54.2
Nitab4.5_0004511g0060 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.0e-19 101.7 68 70.6
AUR62009374 Chenopodium quinoa HOM05D007026 ORTHO05D008493 1.1e-18 98.2 123 38.2
TPR.G17515 Trifolium pratense HOM05D007026 ORTHO05D008493 4.0e-16 89.7 148 42.6
AL7G43500 Arabidopsis lyrata HOM05D007026 ORTHO05D008493 8.9e-16 88.6 99 51.5
Pp3c2_10070 Physcomitrium patens HOM05D007026 ORTHO05D008493 1.5e-15 87.8 184 37.0
Nitab4.5_0000052g0150 Nicotiana tabacum HOM05D007026 ORTHO05D008493 1.1e-13 81.6 86 55.8
SMO147G0317 Selaginella moellendorffii HOM05D007026 ORTHO05D008493 3.5e-12 76.6 146 33.6
Mapoly0153s0019 Marchantia polymorpha HOM05D007026 ORTHO05D008493 1.7e-11 74.3 128 39.1
C05p55310 Brassica napus HOM05D007026 ORTHO05D008493 2.5e-10 70.5 50 74.0
AUR62044089 Chenopodium quinoa HOM05D005782 ORTHO05D007436 7.3e-10 68.9 93 43.0
TPR.G28471 Trifolium pratense HOM05D007026 ORTHO05D008493 9.5e-10 68.6 132 37.1
Aqoxy1G00218 Aquilegia oxysepala HOM05D000196 ORTHO05D000279 3.6e-09 66.6 280 28.6
AUR62023055 Chenopodium quinoa HOM05D005782 ORTHO05D008493 3.4e-07 60.1 41 73.2


User provided reference genes

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