Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 4.9e-97 357.8 185 100.0
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 4.9e-97 357.8 185 100.0
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 7.1e-64 247.7 169 76.3
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 5.1e-62 241.5 182 68.1
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 6.7e-62 241.1 170 70.0
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 1.1e-61 240.4 184 68.5
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.5e-61 239.2 185 65.9
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 7.4e-61 237.7 182 68.7
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 1.4e-59 233.4 179 67.6
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 5.3e-59 231.5 177 68.9
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 3.8e-57 225.3 163 73.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 1.9e-56 223.0 166 68.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 2.1e-55 219.5 173 65.3
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 6.0e-55 218.0 165 67.3
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 1.0e-54 217.2 163 69.3
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.3e-54 216.9 182 63.7
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 5.1e-54 214.9 163 66.9
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 6.7e-54 214.5 178 66.9
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.1e-53 213.8 166 67.5
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.9e-53 213.0 178 61.8
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 3.3e-53 212.2 163 67.5
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 3.3e-53 212.2 167 66.5
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 1.6e-52 209.9 177 62.1
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 3.7e-52 208.8 175 62.9
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 3.7e-52 208.8 210 57.1
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 6.3e-52 208.0 147 72.8
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 2.4e-51 206.1 167 65.9
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 2.4e-51 206.1 147 72.8
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 2.4e-51 206.1 147 72.8
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 4.1e-51 205.3 179 60.3
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 5.3e-51 204.9 170 61.2
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 5.3e-51 204.9 171 63.7
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 1.5e-50 203.4 171 63.2
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 2.0e-50 203.0 180 57.8
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 3.4e-50 202.2 181 58.6
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 5.9e-50 201.4 170 61.2
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 7.6e-50 201.1 164 62.2
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 1.0e-49 200.7 181 58.6
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 1.0e-49 200.7 173 62.4
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 3.8e-49 198.7 168 60.1
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 3.8e-49 198.7 164 62.8
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 3.8e-49 198.7 170 59.4
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.0e-49 198.4 163 65.0
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 1.9e-48 196.4 170 58.8
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.9e-48 196.4 164 60.4
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 1.9e-48 196.4 164 62.8
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 2.5e-48 196.1 170 59.4
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 3.2e-48 195.7 180 57.2
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 3.2e-48 195.7 180 57.2
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 4.2e-48 195.3 190 57.9
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 9.3e-48 194.1 164 59.8
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.6e-47 193.4 172 58.1
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.1e-47 193.0 168 58.9
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 2.7e-47 192.6 174 58.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 2.7e-47 192.6 174 58.6
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 2.7e-47 192.6 167 61.1
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 7.9e-47 191.0 173 57.2
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.3e-46 190.3 173 58.4
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 3.0e-46 189.1 181 56.4
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 6.7e-46 188.0 163 58.9
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.5e-45 186.8 181 56.4
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 1.9e-45 186.4 165 58.2
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 1.9e-45 186.4 174 55.2
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 3.3e-45 185.7 174 54.6
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 9.7e-45 184.1 177 55.4
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 9.7e-45 184.1 175 58.3
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 1.6e-44 183.3 183 57.4
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 3.7e-44 182.2 164 58.5
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 4.8e-44 181.8 205 50.2
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 4.8e-44 181.8 172 56.4
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 6.3e-44 181.4 157 60.5
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.8e-43 179.9 155 62.6
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 2.4e-43 179.5 155 60.0
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 4.1e-43 178.7 176 56.2
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 1.2e-42 177.2 158 60.8
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 1.2e-42 177.2 147 62.6
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.5e-42 176.8 176 51.7
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 3.4e-42 175.6 176 53.4
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 3.4e-42 175.6 147 61.2
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.0e-41 174.1 151 61.6
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 1.3e-41 173.7 165 55.8
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.3e-41 173.7 181 53.0
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 3.8e-41 172.2 139 66.2
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 1.9e-40 169.9 175 52.6
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 9.4e-40 167.5 130 63.1
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.6e-39 166.8 168 54.2
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 3.6e-39 165.6 161 52.2
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.6e-39 165.6 133 60.9
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 4.6e-39 165.2 170 54.7
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 7.9e-39 164.5 171 53.8
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 3.9e-38 162.2 169 52.1
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 5.1e-38 161.8 167 56.9
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 5.1e-38 161.8 175 49.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 3.3e-37 159.1 182 48.4
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 3.3e-37 159.1 182 48.4
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 5.7e-37 158.3 176 49.4
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 1.3e-36 157.1 180 50.6
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 1.7e-36 156.8 162 49.4
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 2.2e-36 156.4 277 38.6
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.4e-35 153.7 157 52.2
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.1e-35 152.5 163 47.9
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 3.1e-35 152.5 155 54.8
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 3.1e-35 152.5 149 53.7
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 5.3e-35 151.8 146 54.8
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 6.9e-35 151.4 172 51.7
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 6.9e-35 151.4 164 51.8
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.2e-34 150.6 213 41.3
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.5e-34 150.2 224 40.6
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 2.0e-34 149.8 166 49.4
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 2.6e-34 149.4 166 48.8
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 5.9e-34 148.3 167 47.9
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 1.3e-33 147.1 141 56.0
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.9e-33 146.0 129 56.6
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 2.9e-33 146.0 221 39.8
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 3.8e-33 145.6 167 48.5
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 6.5e-33 144.8 146 55.5
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 8.5e-33 144.4 131 58.8
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 8.5e-33 144.4 90 73.3
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 1.1e-32 144.1 131 58.0
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 1.4e-32 143.7 145 56.6
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 4.2e-32 142.1 145 57.2
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.1e-31 138.3 145 51.7
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 7.9e-31 137.9 154 53.9
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 6.7e-30 134.8 188 44.7
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.1e-29 134.0 155 47.1
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.7e-28 130.2 163 49.1
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.2e-26 124.0 110 59.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.3e-25 120.6 145 47.6
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.1e-24 117.5 105 60.0
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 2.5e-24 116.3 168 44.6
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 4.7e-23 112.1 160 45.6
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 6.1e-23 111.7 171 39.2
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 5.2e-22 108.6 82 61.0
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 5.2e-22 108.6 133 47.4
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 5.7e-21 105.1 100 52.0
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 8.2e-20 101.3 86 64.0
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 7.7e-18 94.7 85 67.1
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 7.7e-18 94.7 116 54.3
Pp3c7_8860 Physcomitrium patens HOM05D004607 ORTHO05D005836 1.7e-17 93.6 173 35.3
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.1e-16 90.9 77 66.2
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.1e-16 90.9 85 61.2
Mapoly0007s0238 Marchantia polymorpha HOM05D004607 ORTHO05D005836 9.4e-16 87.8 162 34.0
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 3.6e-15 85.9 77 62.3
AagrBONN_evm.TU.Sc2ySwM_362.230 Anthoceros agrestis HOM05D004607 ORTHO05D005836 2.3e-14 83.2 135 39.3
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 2.3e-14 83.2 99 51.5
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 3.0e-14 82.8 77 59.7
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 4.0e-14 82.4 134 44.0
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 1.2e-10 70.9 56 69.6
CBR_g18647 Chara braunii HOM05D004607 ORTHO05D005836 1.7e-09 67.0 183 29.5
FAN19G1486 Fragaria x ananassa HOM05D004607 ORTHO05D005836 8.6e-09 64.7 51 72.5
VMungo0251G1148 Vigna mungo HOM05D004607 ORTHO05D005836 9.5e-08 61.2 81 49.4
VMungo0703G0001 Vigna mungo HOM05D004607 ORTHO05D005836 8.0e-07 58.2 111 42.3


User provided reference genes

Program Settings