Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 2.2e-293 1011.5 510 100.0
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 4.4e-241 837.8 507 80.9
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.1e-236 823.2 507 78.3
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.9e-236 822.4 507 78.1
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.8e-235 818.5 507 78.1
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 4.2e-231 804.7 506 75.9
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.0e-229 800.0 507 76.3
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 5.1e-229 797.7 505 76.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 6.7e-229 797.3 508 76.2
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.1e-228 796.6 507 75.9
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 2.5e-228 795.4 504 76.8
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.8e-227 792.0 507 74.6
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 4.0e-226 788.1 503 75.5
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 3.4e-225 785.0 484 77.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.4e-225 785.0 485 76.9
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.7e-224 782.7 507 73.6
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.2e-223 778.5 483 77.0
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.6e-222 776.2 506 73.5
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.5e-220 769.6 507 72.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.9e-220 769.2 522 71.5
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.9e-220 769.2 508 73.2
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 2.1e-219 765.8 493 75.1
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.1e-219 765.8 510 72.7
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 3.7e-219 765.0 486 75.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.1e-218 763.5 483 74.9
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.4e-218 763.1 505 71.9
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.8e-218 762.7 491 75.2
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 9.0e-218 760.4 508 72.0
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 1.2e-217 760.0 491 74.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.2e-217 760.0 507 71.8
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.5e-217 759.6 491 74.5
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 1.5e-217 759.6 505 72.7
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.8e-217 757.7 491 74.3
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.0e-216 756.9 482 75.1
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.2e-216 755.7 491 74.1
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 3.8e-216 755.0 508 72.4
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 6.5e-216 754.2 490 74.1
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.9e-215 752.7 507 71.6
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.5e-215 752.3 491 74.3
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.6e-214 749.6 506 72.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 3.5e-214 748.4 507 69.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 4.6e-214 748.0 494 73.9
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.8e-213 746.1 502 72.7
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.3e-213 745.7 488 72.5
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.1e-213 744.6 490 72.7
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 8.7e-213 743.8 490 73.1
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 3.3e-212 741.9 471 75.4
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 4.3e-212 741.5 488 72.1
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 5.7e-212 741.1 506 70.6
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 9.6e-212 740.3 488 72.1
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.3e-211 740.0 506 70.2
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 6.3e-211 737.6 506 69.8
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 2.0e-209 732.6 484 73.3
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 2.0e-209 732.6 477 73.2
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 4.5e-209 731.5 484 73.3
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 4.5e-209 731.5 507 71.4
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.3e-208 729.9 504 69.4
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 5.0e-208 728.0 507 69.8
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 6.5e-208 727.6 508 70.5
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.4e-207 726.5 473 73.4
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 4.2e-207 724.9 493 71.8
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.0e-205 720.3 510 68.0
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 6.7e-205 717.6 505 69.7
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 3.3e-204 715.3 504 68.1
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.6e-203 713.0 438 76.7
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.1e-202 710.3 476 71.8
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 2.4e-202 709.1 505 67.7
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 6.9e-202 707.6 507 66.9
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.2e-201 706.8 495 68.9
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.5e-201 706.4 503 68.8
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.0e-201 706.1 483 70.2
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 4.5e-201 704.9 482 69.9
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 5.9e-201 704.5 507 68.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 7.7e-201 704.1 506 68.4
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 8.5e-200 700.7 483 69.6
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.9e-199 699.5 483 70.0
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.2e-199 698.4 479 69.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 5.5e-199 698.0 477 69.6
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 9.4e-199 697.2 500 67.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.7e-198 695.7 479 68.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 2.7e-198 695.7 477 69.0
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.7e-198 695.7 505 67.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 6.1e-198 694.5 505 66.1
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.4e-197 693.3 493 67.3
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.4e-197 693.3 493 67.3
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.4e-197 693.3 493 67.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 2.0e-196 689.5 482 70.5
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.8e-195 685.6 442 73.5
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.3e-194 681.4 406 81.0
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.4e-193 678.7 440 72.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.3e-192 676.8 489 66.7
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.9e-191 672.9 441 72.6
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.0e-188 662.9 466 69.3
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.0e-188 662.9 505 66.5
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 5.7e-188 661.4 481 64.9
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 7.7e-185 651.0 467 68.5
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.7e-184 649.8 474 66.7
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 4.2e-183 645.2 442 71.5
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.4e-183 644.0 389 79.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.0e-181 640.6 468 66.7
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.0e-181 639.0 470 65.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 2.6e-180 636.0 468 63.7
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.1e-178 630.6 474 63.9
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 2.2e-176 622.9 482 61.2
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 5.5e-175 618.2 416 70.0
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.7e-174 615.1 455 65.7
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 6.8e-173 611.3 489 63.4
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.8e-171 605.9 468 64.5
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.4e-170 603.6 469 63.1
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 4.5e-169 598.6 443 65.7
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.5e-167 590.9 481 64.2
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 4.4e-156 555.4 476 56.7
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.1e-149 534.3 470 56.6
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 3.7e-147 525.8 319 82.1
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 5.4e-146 521.9 347 74.4
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.6e-142 510.4 495 52.5
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 4.7e-142 508.8 463 54.0
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.8e-140 501.9 327 74.0
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.2e-138 496.1 344 70.9
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 3.4e-132 476.1 481 50.5
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 7.3e-127 458.4 297 77.1
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.1e-126 456.8 297 76.8
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 9.6e-119 431.4 472 48.5
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 9.3e-114 414.8 282 68.4
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 4.0e-109 399.4 380 55.3
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-100 370.9 250 68.8
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 3.2e-98 363.2 607 37.4
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 1.8e-93 347.4 538 39.6
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 9.4e-82 308.5 466 39.7
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.8e-77 294.3 456 39.9
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.0e-67 259.6 155 73.5
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 4.4e-55 219.9 213 51.2
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 2.7e-52 210.7 173 63.0
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 1.7e-51 208.0 240 47.9
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.0e-39 167.9 309 37.2
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-37 161.4 108 75.9
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 7.5e-31 139.4 117 59.0
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 9.8e-31 139.0 237 39.2
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.9e-30 137.5 100 68.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.3e-27 128.6 87 67.8
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.2e-23 115.5 83 66.3
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 7.8e-20 102.8 69 68.1
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 2.3e-19 101.3 90 54.4
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 6.6e-19 99.8 68 76.5
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 4.4e-07 60.5 41 70.7


User provided reference genes

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