Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 4.5e-115 417.9 207 100.0
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.0e-46 189.9 238 50.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.8e-44 183.3 234 46.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.7e-43 179.5 232 45.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.5e-43 178.7 244 45.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.3e-42 177.2 218 46.8
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.9e-41 173.3 226 45.1
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.5e-41 172.9 228 46.1
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 2.8e-40 169.5 244 44.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 5.2e-39 165.2 223 43.9
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 6.8e-39 164.9 232 45.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.8e-39 164.9 240 42.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 3.4e-38 162.5 240 42.5
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 7.5e-38 161.4 243 42.0
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 2.2e-37 159.8 230 40.9
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.9e-37 159.5 245 43.3
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.9e-37 158.7 224 41.5
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.4e-37 158.3 236 41.9
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 3.2e-36 156.0 214 46.7
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.2e-36 156.0 250 39.2
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.2e-36 156.0 216 42.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 5.4e-36 155.2 219 43.8
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.6e-35 152.1 230 43.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.8e-35 151.4 234 42.7
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.7e-34 150.2 241 41.5
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 3.0e-34 149.4 233 42.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 3.9e-34 149.1 246 41.1
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 3.9e-34 149.1 253 39.9
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 5.0e-34 148.7 249 40.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.1e-33 147.5 243 41.6
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.1e-33 147.5 244 41.4
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.1e-33 147.5 196 47.4
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.5e-33 147.1 232 40.1
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 4.3e-33 145.6 210 44.3
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 9.5e-33 144.4 243 41.2
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.6e-32 143.7 239 38.1
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.1e-32 143.3 220 40.0
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 2.8e-32 142.9 234 39.7
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 2.8e-32 142.9 234 39.7
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 3.6e-32 142.5 227 41.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 8.0e-32 141.4 189 46.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 8.0e-32 141.4 189 46.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.2e-30 137.5 239 39.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.6e-30 136.3 192 44.8
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.6e-30 136.3 205 42.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.4e-30 135.6 188 44.1
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 4.4e-30 135.6 235 38.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.5e-30 134.8 189 41.8
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.3e-29 134.0 213 39.9
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-29 133.7 216 40.3
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.2e-29 133.3 213 39.9
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.2e-29 133.3 217 40.1
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 2.9e-29 132.9 238 38.7
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.9e-29 132.9 229 39.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.9e-29 132.1 227 39.2
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 6.4e-29 131.7 234 38.9
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.1e-28 131.0 219 40.2
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.4e-28 130.6 208 38.9
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.4e-28 130.6 236 37.3
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.9e-28 130.2 232 38.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.4e-28 129.8 227 38.8
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.4e-28 129.8 194 40.7
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.2e-28 129.4 212 39.6
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 4.1e-28 129.0 219 39.7
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 5.4e-28 128.6 202 42.1
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 5.4e-28 128.6 204 40.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.4e-28 128.6 212 39.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 7.0e-28 128.3 250 37.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 9.2e-28 127.9 227 38.3
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.2e-27 127.5 198 39.4
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 1.6e-27 127.1 217 40.1
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.6e-27 127.1 247 36.4
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.1e-27 126.7 244 35.2
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.1e-27 126.7 245 34.7
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.7e-27 126.3 237 38.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 3.5e-27 125.9 212 39.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.5e-27 125.9 206 38.8
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.5e-27 125.9 205 39.5
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 4.6e-27 125.6 211 39.3
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 6.0e-27 125.2 189 39.7
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 6.0e-27 125.2 239 38.5
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.0e-26 124.4 187 41.2
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.3e-26 123.2 196 39.3
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.0e-26 122.9 235 36.6
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 6.6e-26 121.7 198 40.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 8.6e-26 121.3 190 40.5
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 8.6e-26 121.3 193 38.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.1e-25 120.9 264 36.4
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.1e-25 120.9 198 38.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 3.3e-25 119.4 238 38.2
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.3e-25 119.4 234 37.6
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 7.3e-25 118.2 210 37.1
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 7.3e-25 118.2 228 36.4
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 9.5e-25 117.9 220 37.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 9.5e-25 117.9 186 39.8
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 9.5e-25 117.9 233 37.8
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 9.5e-25 117.9 196 38.3
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-24 117.5 210 36.2
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.6e-24 117.1 217 36.9
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-24 117.1 234 33.8
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 2.1e-24 116.7 196 39.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-24 116.7 236 33.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-24 116.3 231 34.6
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.8e-24 116.3 91 59.3
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 4.7e-24 115.5 220 35.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.7e-24 115.5 210 36.7
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.7e-24 115.5 210 36.7
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 4.7e-24 115.5 238 37.4
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 4.7e-24 115.5 233 34.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.7e-24 115.5 233 34.8
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.7e-24 115.5 229 38.4
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 8.1e-24 114.8 200 38.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.4e-23 114.0 196 38.3
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.4e-23 114.0 212 37.3
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.4e-23 114.0 230 34.3
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.8e-23 113.6 196 36.2
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 1.8e-23 113.6 196 36.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.8e-23 113.6 207 38.6
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 3.1e-23 112.8 218 38.5
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 5.2e-23 112.1 201 37.8
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 5.2e-23 112.1 208 36.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 6.8e-23 111.7 208 36.5
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 6.8e-23 111.7 208 36.5
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 8.9e-23 111.3 221 38.0
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 8.9e-23 111.3 230 33.5
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.0e-22 110.2 197 36.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.8e-22 108.6 200 36.5
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.8e-22 108.6 200 36.5
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.3e-21 107.5 242 33.1
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.3e-21 107.5 207 35.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.7e-21 107.1 239 33.5
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.7e-21 107.1 221 36.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.7e-21 107.1 192 37.5
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.9e-21 106.3 225 33.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 2.9e-21 106.3 221 34.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.9e-21 106.3 216 33.8
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.7e-21 105.9 170 40.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.1e-20 104.4 219 33.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.4e-20 104.0 193 36.8
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.2e-20 102.8 191 36.6
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.2e-20 102.8 218 36.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 7.1e-20 101.7 201 35.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 7.1e-20 101.7 197 34.5
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 3.5e-19 99.4 219 32.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 6.0e-19 98.6 217 30.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.0e-19 98.6 217 30.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.3e-18 97.4 236 30.5
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 6.6e-18 95.1 215 31.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 8.6e-18 94.7 200 33.5
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.5e-17 93.2 230 32.2
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.5e-17 93.2 230 32.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 8.1e-16 88.2 230 32.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 8.1e-16 88.2 179 35.2
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.9e-13 79.0 107 40.2
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.1e-12 75.1 89 43.8
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 7.1e-12 75.1 89 43.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.5e-11 72.8 106 36.8
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 7.3e-09 65.1 114 36.0
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 4.7e-08 62.4 48 58.3
FvH4_6g23250 Fragaria vesca HOM05D004075 ORTHO05D004538 1.4e-07 60.8 74 44.6
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 9.9e-06 54.7 110 36.4


User provided reference genes

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