Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 3.2e-229 798.1 420 100.0
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 1.4e-221 772.7 420 97.6
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 1.8e-179 632.9 424 76.2
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 2.3e-179 632.5 425 75.1
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 2.3e-179 632.5 425 75.1
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 6.8e-179 630.9 424 75.7
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.5e-178 629.8 426 75.8
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 4.4e-178 628.2 425 74.4
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 5.7e-178 627.9 424 75.9
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.9e-177 625.5 428 74.8
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 3.7e-177 625.2 429 74.8
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.9e-177 624.8 428 74.8
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 9.2e-176 620.5 425 74.8
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.6e-175 618.2 425 75.1
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 4.6e-175 618.2 426 73.9
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 7.8e-175 617.5 425 73.6
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 1.0e-174 617.1 426 74.9
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.3e-174 616.7 426 74.6
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.3e-174 615.9 426 73.9
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.3e-174 615.9 426 73.7
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 3.9e-174 615.1 428 74.3
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 6.6e-174 614.4 421 73.4
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 8.6e-174 614.0 424 75.0
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.5e-173 613.2 423 74.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.5e-173 613.2 424 74.3
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.5e-173 612.5 424 74.5
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 3.3e-173 612.1 426 74.2
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.3e-173 612.1 421 72.9
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 3.3e-173 612.1 421 74.3
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 4.3e-173 611.7 421 74.3
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 9.5e-173 610.5 424 73.8
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 2.1e-172 609.4 428 74.1
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 4.7e-172 608.2 426 72.5
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 4.7e-172 608.2 425 74.1
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 6.2e-172 607.8 423 74.0
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 8.0e-172 607.4 428 72.9
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.0e-172 607.4 424 72.2
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.4e-171 606.7 389 77.9
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.8e-171 606.3 389 78.1
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.3e-171 605.9 421 72.9
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.1e-171 605.5 421 72.4
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 3.1e-171 605.5 416 74.8
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 3.1e-171 605.5 425 74.4
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.2e-171 604.7 421 73.4
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 6.8e-171 604.4 424 74.1
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 8.9e-171 604.0 426 73.5
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.5e-170 603.2 432 71.8
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.5e-170 603.2 422 73.0
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 2.0e-170 602.8 421 72.2
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 5.8e-170 601.3 423 72.3
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 5.8e-170 601.3 423 72.3
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 1.3e-169 600.1 421 72.2
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.3e-169 600.1 421 72.9
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.7e-169 599.7 371 79.2
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 1.7e-169 599.7 425 71.8
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 1.7e-169 599.7 426 72.1
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.2e-169 599.4 370 79.5
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 2.9e-169 599.0 423 72.1
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.9e-169 598.2 432 71.1
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 4.9e-169 598.2 429 71.1
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 4.9e-169 598.2 426 72.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 4.9e-169 598.2 421 73.2
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 6.4e-169 597.8 422 72.5
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-168 597.0 423 72.1
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 1.4e-168 596.7 423 72.1
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.9e-168 596.3 429 73.4
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 2.4e-168 595.9 421 70.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 2.4e-168 595.9 421 70.8
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 2.4e-168 595.9 421 70.8
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.2e-168 595.5 431 71.9
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 4.1e-168 595.1 428 72.7
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 4.1e-168 595.1 424 72.9
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.6e-167 593.2 421 70.5
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.6e-167 593.2 431 70.8
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 2.0e-167 592.8 427 71.2
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 2.0e-167 592.8 424 70.8
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 2.7e-167 592.4 440 69.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.7e-167 592.4 423 70.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 2.7e-167 592.4 424 71.2
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.7e-167 592.4 423 70.7
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.6e-167 591.7 427 71.4
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 4.6e-167 591.7 421 72.0
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 6.0e-167 591.3 424 70.5
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 1.0e-166 590.5 431 71.5
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.3e-166 590.1 422 71.1
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 3.9e-166 588.6 441 69.6
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 5.0e-166 588.2 421 70.8
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 5.0e-166 588.2 427 71.0
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.6e-166 587.8 431 70.3
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 3.3e-165 585.5 424 71.0
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 7.3e-165 584.3 425 70.1
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 9.5e-165 583.9 389 73.3
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.8e-164 582.4 408 73.8
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.4e-163 580.1 426 71.8
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.2e-162 577.0 396 72.0
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.0e-162 576.2 409 71.9
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 3.4e-162 575.5 426 71.6
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 7.5e-162 574.3 370 77.0
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 7.5e-162 574.3 370 77.3
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 1.3e-161 573.5 404 72.0
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 1.7e-161 573.2 401 73.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 2.9e-161 572.4 396 71.7
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.9e-161 572.4 408 72.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 6.4e-161 571.2 423 70.9
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 6.4e-161 571.2 405 73.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.4e-160 569.3 417 71.0
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.4e-160 569.3 428 68.0
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.2e-160 568.9 408 71.1
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 3.2e-160 568.9 420 69.5
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 5.4e-160 568.2 430 67.4
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 7.1e-160 567.8 395 73.7
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.3e-158 563.5 412 71.4
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.7e-158 563.1 370 75.9
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 5.1e-158 561.6 405 72.3
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 9.5e-157 557.4 422 69.7
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 2.1e-156 556.2 473 61.9
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 4.0e-155 552.0 361 75.6
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 4.4e-154 548.5 407 69.3
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.3e-153 547.0 383 70.8
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.7e-153 546.6 421 67.5
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.7e-153 546.6 410 67.8
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.4e-152 543.5 335 80.0
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.3e-150 537.0 427 64.9
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.0e-150 535.8 421 66.3
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 3.9e-150 535.4 411 67.9
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 1.1e-149 533.9 371 72.2
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.1e-147 527.3 438 66.2
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 1.4e-147 526.9 379 71.0
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 9.0e-147 524.2 423 63.1
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 3.4e-146 522.3 371 67.1
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 7.6e-146 521.2 431 64.0
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.1e-144 517.3 452 62.6
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.2e-144 515.8 322 78.9
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 7.1e-144 514.6 393 65.1
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 9.0e-139 497.7 320 76.9
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 4.2e-136 488.8 444 61.5
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.2e-135 487.3 364 65.7
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.3e-134 483.0 455 60.7
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.6e-132 476.9 381 64.6
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 8.1e-132 474.6 411 63.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 1.2e-127 460.7 350 66.0
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 5.6e-125 451.8 372 66.7
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 4.8e-124 448.7 425 55.1
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.9e-123 444.9 332 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.2e-121 439.9 384 60.2
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.8e-118 430.3 359 63.2
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 2.8e-116 422.9 403 56.3
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 8.2e-116 421.4 433 58.2
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.9e-109 400.2 241 82.2
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 6.3e-108 395.2 334 62.6
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 2.9e-105 386.3 271 70.5
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 6.7e-102 375.2 231 78.8
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 4.4e-93 345.9 384 49.0
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 1.1e-88 331.3 211 80.6
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 3.0e-86 323.2 390 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.1e-83 313.2 385 46.2
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 5.3e-83 312.4 278 58.3
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.5e-82 309.7 196 76.0
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 2.3e-70 270.4 347 50.1
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 5.4e-67 259.2 151 81.5
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.8e-63 246.9 302 46.4
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 5.8e-61 239.2 221 58.4
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 9.8e-61 238.4 288 46.2
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.1e-51 208.4 213 52.6
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.7e-50 203.8 244 44.3
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.7e-47 193.0 182 56.0
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.2e-46 189.5 425 35.3
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.1e-43 181.8 116 74.1
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 1.3e-28 131.7 131 56.5
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.2e-27 127.1 75 81.3
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.4e-22 111.7 69 75.4
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 6.4e-20 102.8 75 66.7
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 4.2e-19 100.1 67 68.7
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.8e-17 94.7 118 48.3
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 1.5e-16 91.7 101 49.5
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 1.6e-15 88.2 61 68.9
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 2.1e-15 87.8 55 74.5
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.4e-14 85.1 68 63.2
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 9.3e-11 72.4 123 38.2
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 3.9e-09 67.0 60 55.0
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 4.0e-06 57.0 63 54.0
BcaNung06569 Brassica carinata HOM05D003740 ORTHO05D027079 5.3e-06 56.6 85 43.5


User provided reference genes

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