Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 3.0e-221 771.5 386 100.0
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 2.0e-217 758.8 386 98.7
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.0e-120 437.6 313 70.3
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.3e-120 436.4 324 67.0
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 5.0e-120 435.3 356 63.5
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 5.6e-119 431.8 322 68.6
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 7.3e-119 431.4 320 68.8
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 7.3e-119 431.4 328 69.5
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 9.5e-119 431.0 345 63.2
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 6.1e-118 428.3 322 66.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.2e-116 424.1 333 65.8
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.2e-116 424.1 327 65.4
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.6e-116 422.9 295 70.5
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 4.4e-116 422.2 318 66.0
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.3e-115 420.6 323 65.9
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.3e-115 420.6 326 65.6
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.1e-114 417.5 287 70.7
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 1.4e-114 417.2 320 66.9
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 1.4e-114 417.2 299 68.9
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.8e-114 416.8 294 70.4
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.2e-114 416.0 326 64.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.6e-113 413.7 297 68.7
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.0e-113 413.3 326 63.5
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 6.0e-113 411.8 325 63.4
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 6.0e-113 411.8 293 71.0
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 6.0e-113 411.8 261 75.9
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 5.0e-112 408.7 325 64.6
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 5.0e-112 408.7 300 68.3
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 8.6e-112 407.9 326 64.7
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.5e-111 407.1 301 66.8
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.9e-111 406.8 313 66.8
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 7.3e-111 404.8 337 62.6
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 2.1e-110 403.3 274 71.2
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 4.7e-110 402.1 295 68.5
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.7e-110 402.1 333 62.5
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 4.7e-110 402.1 284 71.1
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 6.2e-110 401.7 317 64.4
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.8e-109 400.2 262 74.8
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 1.8e-109 400.2 314 63.4
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 3.1e-109 399.4 268 74.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 6.8e-109 398.3 333 62.2
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 6.8e-109 398.3 295 68.8
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 8.9e-109 397.9 293 70.3
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 8.9e-109 397.9 324 64.8
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 2.6e-108 396.4 276 67.8
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 2.6e-108 396.4 327 64.8
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 4.4e-108 395.6 322 61.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.3e-107 394.0 322 62.1
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.3e-107 394.0 294 65.6
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 2.2e-107 393.3 332 61.4
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.2e-107 393.3 352 58.8
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 2.9e-107 392.9 294 66.7
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 4.9e-107 392.1 353 57.2
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 6.4e-107 391.7 332 61.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 6.4e-107 391.7 281 66.2
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 1.1e-106 391.0 332 59.3
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 1.4e-106 390.6 266 72.6
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 1.4e-106 390.6 294 66.7
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.9e-106 390.2 263 69.6
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.9e-106 390.2 281 67.3
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 5.4e-106 388.7 271 71.2
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.4e-106 388.7 313 65.2
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 2.7e-105 386.3 292 63.7
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 2.7e-105 386.3 393 56.2
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.6e-105 385.6 260 70.8
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 6.0e-105 385.2 259 71.0
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 6.0e-105 385.2 269 72.9
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 7.8e-105 384.8 266 69.2
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 3.0e-104 382.9 264 71.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 3.9e-104 382.5 267 70.4
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.9e-104 382.5 260 70.4
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 6.6e-104 381.7 307 64.5
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 2.5e-103 379.8 292 65.1
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 2.5e-103 379.8 269 69.5
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 4.3e-103 379.0 315 60.3
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 9.5e-103 377.9 273 68.5
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 9.5e-103 377.9 348 56.6
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 1.2e-102 377.5 266 68.4
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.2e-102 377.5 263 69.2
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 8.1e-102 374.8 269 68.8
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.1e-101 374.4 358 55.0
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.0e-101 372.5 264 67.0
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 8.9e-101 371.3 249 73.9
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.2e-100 370.9 289 64.4
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 9.9e-100 367.9 359 54.6
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 9.9e-100 367.9 237 74.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.7e-99 367.1 302 60.9
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.7e-99 367.1 368 53.3
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.7e-99 367.1 360 53.9
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 3.7e-99 365.9 247 71.7
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 8.3e-99 364.8 287 62.0
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.1e-98 364.4 354 53.4
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 4.1e-98 362.5 410 50.5
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 9.2e-98 361.3 237 72.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.2e-97 360.9 270 64.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 3.9e-96 355.9 304 58.6
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 8.6e-96 354.8 257 65.0
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 4.3e-95 352.4 213 79.8
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 9.5e-95 351.3 342 55.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.4e-93 347.4 286 62.9
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 5.2e-93 345.5 277 62.1
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.5e-87 327.4 265 57.0
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.9e-87 327.0 265 57.0
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.6e-87 324.7 265 57.4
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 9.6e-87 324.7 210 73.3
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.4e-85 320.9 321 57.0
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 2.4e-85 320.1 266 58.3
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 3.4e-84 316.2 224 70.1
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 2.3e-80 303.5 246 61.8
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.0e-80 303.1 193 74.6
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 4.8e-78 295.8 183 77.6
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 6.2e-78 295.4 278 52.2
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 2.3e-72 276.9 210 61.0
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 2.3e-64 250.4 247 50.6
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.5e-63 247.7 245 49.4
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 9.7e-55 218.4 270 45.9
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 4.5e-52 209.5 215 49.8
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 3.2e-50 203.4 119 80.7
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 8.8e-48 195.3 186 56.5
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 9.7e-47 191.8 119 72.3
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.1e-41 174.1 164 54.9
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.7e-25 120.6 83 65.1
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 2.9e-19 100.5 68 73.5
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 3.8e-19 100.1 68 69.1
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.5e-18 98.2 160 39.4
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.2e-18 97.1 61 70.5
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.2e-18 97.1 61 70.5
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.5e-15 88.2 114 47.4
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.3e-14 85.1 159 34.0
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.4e-13 81.6 131 36.6
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.8e-13 81.3 131 36.6
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 4.1e-13 80.1 131 36.6
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 4.1e-13 80.1 198 30.3
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 4.1e-13 80.1 131 36.6
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.6e-12 78.2 131 35.9
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 2.0e-12 77.8 131 35.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 2.0e-12 77.8 138 35.5
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.7e-12 77.4 131 35.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.7e-12 77.4 220 32.3
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.7e-12 77.4 138 35.5
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.7e-12 77.4 192 30.7
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 2.7e-12 77.4 131 35.1
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 2.7e-12 77.4 131 36.6
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 3.5e-12 77.0 131 34.4
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 3.5e-12 77.0 189 32.3
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 5.9e-12 76.3 138 34.8
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 7.7e-12 75.9 131 35.1
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 7.7e-12 75.9 131 35.1
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 7.7e-12 75.9 198 29.8
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 7.7e-12 75.9 116 37.9
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 7.7e-12 75.9 131 35.1
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 1.0e-11 75.5 131 33.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.0e-11 75.5 131 35.9
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.3e-11 75.1 198 30.8
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.3e-11 74.3 185 31.9
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.9e-11 73.9 116 36.2
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 3.8e-11 73.6 131 35.1
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 5.0e-11 73.2 131 35.1
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 5.0e-11 73.2 248 25.8
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 5.0e-11 73.2 199 29.1
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 6.6e-11 72.8 131 33.6
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.6e-11 72.8 191 28.8
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 2.5e-10 70.9 131 34.4
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.3e-10 70.5 138 32.6
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 7.2e-10 69.3 125 35.2
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.1e-09 67.8 201 28.4
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.1e-09 67.8 140 29.3
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 4.7e-09 66.6 191 26.7
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 6.1e-09 66.2 62 51.6
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.0e-08 65.5 152 30.9
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 2.3e-08 64.3 192 28.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.3e-08 64.3 97 36.1
TAR628G0330 Trochodendron aralioides HOM05D003844 ORTHO05D004534 3.0e-08 63.9 216 27.3
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 6.8e-08 62.8 107 32.7
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 8.9e-08 62.4 90 36.7
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 1.2e-07 62.0 193 28.5
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.2e-07 62.0 118 33.9
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 2.0e-07 61.2 203 25.6
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 4.4e-07 60.1 103 35.9
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 9.8e-07 58.9 129 31.0
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.2e-06 57.8 308 24.7
DCAR_019512 Daucus carota HOM05D003844 ORTHO05D004534 4.9e-06 56.6 197 25.4


User provided reference genes

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