Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 9.6e-137 490.3 282 100.0
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 3.6e-91 339.0 245 71.4
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.0e-90 337.4 194 97.9
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.0e-82 309.3 240 67.9
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.5e-81 307.0 237 66.2
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.8e-79 300.1 274 59.5
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 4.1e-79 298.9 236 64.8
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 7.0e-79 298.1 246 68.3
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 3.5e-78 295.8 228 68.0
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 3.8e-77 292.4 229 66.8
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 3.8e-77 292.4 229 66.8
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 2.5e-76 289.7 229 66.8
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 4.2e-76 288.9 233 63.5
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 7.2e-76 288.1 244 63.9
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 2.1e-75 286.6 245 62.0
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 3.6e-75 285.8 241 63.9
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.6e-75 285.8 239 63.6
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 3.6e-75 285.8 254 60.6
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 6.1e-75 285.0 236 62.7
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 8.0e-75 284.6 229 64.2
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.0e-74 282.3 235 63.8
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 5.7e-73 278.5 256 60.2
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.7e-72 276.9 235 61.7
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 2.4e-71 273.1 240 62.5
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 4.1e-71 272.3 237 62.9
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 1.6e-70 270.4 245 60.4
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.6e-70 270.4 231 61.9
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 5.9e-70 268.5 241 58.9
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.3e-69 267.3 238 60.5
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 6.6e-69 265.0 236 60.2
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 8.6e-69 264.6 186 71.0
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.5e-68 263.1 236 58.5
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.5e-68 263.1 236 58.5
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-67 260.8 236 57.6
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 2.8e-67 259.6 234 59.4
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 4.7e-67 258.8 235 60.0
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 5.8e-65 251.9 186 66.1
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 5.8e-65 251.9 186 66.1
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 2.2e-64 250.0 190 68.4
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 3.7e-64 249.2 246 55.3
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 8.3e-64 248.1 190 67.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 1.1e-63 247.7 231 58.4
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 2.4e-63 246.5 235 55.7
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 6.0e-62 241.9 247 53.0
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 3.3e-60 236.1 233 56.7
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 9.5e-60 234.6 222 55.4
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.6e-59 233.8 225 54.7
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 6.4e-56 221.9 236 55.1
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.9e-55 220.3 238 55.9
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 2.4e-55 219.9 234 50.9
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 5.4e-55 218.8 226 57.5
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 1.6e-54 217.2 225 52.4
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.6e-54 217.2 238 50.0
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 3.5e-54 216.1 234 53.0
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 1.0e-53 214.5 232 51.3
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 1.7e-53 213.8 240 48.3
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 2.3e-53 213.4 235 53.2
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 6.6e-53 211.8 238 52.1
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 8.6e-53 211.5 153 64.7
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.5e-52 210.7 235 51.9
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.5e-52 210.7 235 51.9
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.5e-52 210.7 235 51.9
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.2e-51 207.6 167 63.5
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.0e-50 202.6 250 47.6
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 8.9e-50 201.4 232 49.1
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 8.9e-50 201.4 232 49.1
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 1.2e-49 201.1 232 49.1
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.2e-49 201.1 232 49.1
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.5e-49 200.7 234 49.1
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 2.6e-49 199.9 232 49.1
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 4.4e-49 199.1 243 48.1
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 9.9e-49 198.0 247 49.8
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.7e-48 196.1 220 48.6
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.9e-48 195.7 233 48.5
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 8.4e-48 194.9 220 48.6
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.9e-47 193.7 240 44.6
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 9.2e-47 191.4 131 70.2
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 9.2e-47 191.4 242 43.4
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.2e-46 191.0 161 57.8
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 2.7e-46 189.9 194 49.5
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.7e-45 187.2 240 45.0
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 2.3e-45 186.8 165 55.2
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 3.0e-45 186.4 148 60.8
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 2.5e-44 183.3 168 59.5
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 3.6e-43 179.5 165 59.4
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 1.5e-41 174.1 158 62.7
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 3.4e-41 172.9 232 45.3
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.9e-40 169.9 148 62.8
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.9e-40 169.9 148 62.8
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 3.2e-39 166.4 231 45.0
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 3.2e-39 166.4 148 61.5
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 2.7e-38 163.3 225 43.6
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 3.5e-38 162.9 265 39.6
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.7e-37 160.6 151 60.3
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 1.7e-37 160.6 167 56.9
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.7e-37 160.6 155 58.1
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 6.6e-37 158.7 148 57.4
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 1.5e-36 157.5 155 55.5
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.9e-36 157.1 167 56.3
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 2.5e-36 156.8 268 38.8
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.3e-36 156.4 148 56.8
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 9.6e-36 154.8 148 58.1
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 2.1e-35 153.7 188 46.3
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 6.2e-35 152.1 159 48.4
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.1e-34 149.8 241 39.4
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 4.0e-34 149.4 238 35.7
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.2e-33 147.9 237 41.8
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 1.2e-33 147.9 153 55.6
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 1.2e-33 147.9 147 56.5
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 2.9e-32 143.3 150 51.3
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 6.4e-32 142.1 148 55.4
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 2.3e-29 133.7 237 35.9
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.3e-27 127.9 200 39.5
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.2e-25 121.3 265 30.6
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 4.2e-23 112.8 66 75.8
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 4.2e-23 112.8 78 56.4
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 2.1e-22 110.5 123 52.0
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 4.1e-10 69.7 80 45.0
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 5.3e-10 69.3 66 45.5
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 1.3e-08 64.7 83 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 2.5e-07 60.5 77 39.0
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 3.5e-06 56.6 75 33.3
Pp3c19_7090 Physcomitrium patens HOM05D011398 ORTHO05D007243 7.9e-06 55.5 58 36.2


User provided reference genes

Program Settings