Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 0.0e+00 1086.6 613 100.0
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 1.6e-298 1028.9 652 91.4
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 4.5e-46 190.3 298 42.3
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 3.8e-45 187.2 348 39.4
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 7.1e-44 183.0 320 40.3
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 7.1e-44 183.0 345 39.4
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 4.6e-43 180.3 287 42.5
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 4.6e-43 180.3 340 39.4
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 3.3e-41 174.1 214 46.7
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 9.6e-41 172.6 248 42.7
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 1.3e-40 172.2 281 39.9
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 6.3e-40 169.9 334 37.1
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 6.3e-40 169.9 274 40.5
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 4.1e-39 167.2 206 47.1
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 9.0e-39 166.0 236 41.9
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 7.6e-38 162.9 217 41.9
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 2.7e-35 154.5 303 34.7
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 4.6e-35 153.7 199 46.7
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.8e-34 151.8 131 54.2
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 3.0e-34 151.0 172 44.8
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 3.0e-34 151.0 182 44.5
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 5.1e-34 150.2 131 54.2
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 5.1e-34 150.2 178 46.1
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 8.7e-34 149.4 309 34.3
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.5e-33 148.7 131 52.7
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 1.9e-33 148.3 135 53.3
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 7.4e-33 146.4 156 51.3
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 4.8e-32 143.7 214 41.1
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 8.2e-32 142.9 218 40.8
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 1.4e-31 142.1 296 35.8
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 2.4e-31 141.4 116 59.5
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 3.1e-31 141.0 281 36.3
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 4.1e-31 140.6 209 44.0
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.9e-30 136.7 383 31.1
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 5.9e-30 136.7 202 41.1
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 3.8e-29 134.0 344 32.8
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 3.8e-29 134.0 164 43.9
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 7.2e-28 129.8 200 38.5
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 7.2e-28 129.8 212 38.2
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 1.6e-27 128.6 212 41.5
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 2.1e-27 128.3 186 44.6
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 4.6e-27 127.1 231 37.7
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 1.1e-25 122.5 369 27.9
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 1.1e-25 122.5 136 47.8
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 2.0e-25 121.7 112 53.6
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 9.7e-25 119.4 215 40.9
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 9.7e-25 119.4 116 50.9
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 1.7e-24 118.6 258 37.6
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 1.4e-23 115.5 178 40.4
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 1.8e-23 115.2 139 51.1
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 5.3e-23 113.6 212 34.0
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 3.4e-22 110.9 164 39.0
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 7.7e-22 109.8 163 41.1
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.0e-21 109.4 113 53.1
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 1.0e-18 99.4 214 34.1
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 1.0e-18 99.4 241 31.1
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.4e-18 99.0 136 42.6
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 1.8e-18 98.6 181 38.1
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 3.0e-18 97.8 144 41.7
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 8.8e-18 96.3 238 32.8
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 9.7e-17 92.8 145 38.6
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 4.8e-16 90.5 141 40.4
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 6.3e-16 90.1 209 32.1
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 6.3e-16 90.1 183 33.3
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 8.2e-16 89.7 105 45.7
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 8.2e-16 89.7 119 43.7
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.8e-15 88.6 135 40.7
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 2.4e-15 88.2 115 43.5
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 5.3e-15 87.0 129 40.3
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 1.6e-14 85.5 130 36.9
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 2.0e-14 85.1 284 27.5
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 3.5e-14 84.3 165 34.5
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 3.5e-14 84.3 236 30.9
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 2.2e-13 81.6 166 33.7
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 3.8e-13 80.9 141 39.0
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.2e-11 75.9 211 29.4
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 3.6e-11 74.3 165 32.7
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 2.3e-10 71.6 132 34.8
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 4.0e-10 70.9 165 31.5
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 5.2e-10 70.5 194 31.4
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 3.3e-09 67.8 61 50.8
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 9.7e-09 66.2 188 29.3
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 1.7e-08 65.5 341 24.6
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 4.8e-08 63.9 187 32.6
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 1.2e-06 59.3 99 38.4
Sopen10g030520 Solanum pennellii HOM05D029882 ORTHO05D037717 2.7e-06 58.2 77 40.3
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 3.5e-06 57.8 101 34.7
Aa31LG1G23600 Aethionema arabicum HOM05D012091 ORTHO05D013971 4.5e-06 57.4 218 27.1


User provided reference genes

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