Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 3.1e-148 528.5 278 100.0
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.3e-109 400.2 291 74.2
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 3.2e-108 395.6 283 73.9
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 1.0e-106 390.6 287 74.9
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.1e-106 388.3 284 74.3
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 5.1e-106 388.3 284 74.3
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.9e-105 386.3 280 75.4
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.6e-104 383.3 287 72.5
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.1e-104 382.9 282 73.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.8e-104 382.5 290 71.0
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 4.7e-104 381.7 288 73.6
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.1e-103 380.6 280 74.3
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.1e-103 380.6 288 71.9
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.8e-103 379.8 278 75.2
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.8e-103 379.8 280 74.3
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.4e-103 379.4 292 71.2
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.0e-103 378.6 290 72.8
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 4.0e-103 378.6 290 73.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.9e-103 377.9 292 71.9
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.5e-102 376.7 287 71.4
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.5e-102 376.7 268 74.3
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.0e-102 376.3 285 73.7
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 4.4e-102 375.2 278 73.7
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.8e-102 374.8 310 68.4
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.2e-101 372.9 318 66.7
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.9e-101 372.5 278 73.7
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.9e-101 371.7 234 80.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 6.4e-101 371.3 281 71.9
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 6.4e-101 371.3 239 80.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.4e-100 370.2 288 68.1
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.4e-100 370.2 240 79.2
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.9e-100 369.8 286 72.4
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 1.9e-100 369.8 285 69.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 2.4e-100 369.4 272 72.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 3.2e-100 369.0 240 80.4
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.2e-100 369.0 263 73.8
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 2.7e-99 365.9 282 68.8
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.7e-99 365.9 282 68.8
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 7.8e-99 364.4 232 81.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.0e-98 364.0 232 78.9
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.0e-98 364.0 285 69.8
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.3e-98 362.8 286 68.2
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.3e-98 362.8 281 70.5
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 6.6e-98 361.3 286 68.5
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.1e-97 360.5 281 71.2
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.1e-97 360.5 234 78.6
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.5e-97 360.1 262 73.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.5e-97 360.1 282 69.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.5e-97 360.1 281 69.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.5e-97 360.1 282 69.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.5e-97 359.4 281 69.0
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 3.3e-97 359.0 283 68.9
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 3.3e-97 359.0 282 67.4
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 5.6e-97 358.2 288 67.0
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 5.6e-97 358.2 285 67.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.3e-97 357.8 288 69.1
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 9.6e-97 357.5 286 67.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 9.6e-97 357.5 292 66.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 9.6e-97 357.5 292 67.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.3e-96 357.1 281 70.1
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.3e-96 357.1 286 68.2
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.1e-96 356.3 281 68.7
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.1e-96 356.3 232 77.6
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.6e-96 355.5 285 68.8
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.6e-96 355.5 286 68.2
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.6e-96 355.5 285 68.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.6e-96 355.5 285 68.8
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 4.8e-96 355.1 283 67.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.1e-95 354.0 284 68.3
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.1e-95 354.0 284 68.3
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.4e-95 353.6 275 70.2
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 2.4e-95 352.8 281 68.0
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.4e-95 352.8 285 67.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.1e-95 352.4 237 75.9
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 6.9e-95 351.3 273 67.0
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 6.9e-95 351.3 231 78.4
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.9e-95 351.3 294 65.6
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.2e-94 350.5 240 75.0
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.5e-94 350.1 286 66.8
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.5e-94 350.1 286 66.8
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.5e-94 350.1 236 75.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-94 350.1 294 65.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.0e-94 349.7 294 65.6
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.6e-94 349.4 282 66.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.4e-94 349.0 236 76.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 9.9e-94 347.4 236 74.6
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.7e-93 346.7 260 71.2
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.7e-93 346.7 287 66.9
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 2.9e-93 345.9 290 64.5
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.4e-92 342.8 264 70.5
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.4e-92 341.7 280 70.0
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.2e-91 340.5 236 75.4
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.7e-91 339.3 278 65.5
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.0e-90 337.4 288 66.3
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.3e-90 336.3 244 72.5
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 2.1e-88 329.7 225 74.2
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 6.2e-88 328.2 226 75.7
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 4.0e-87 325.5 228 70.2
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 4.0e-87 325.5 234 73.9
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 5.3e-87 325.1 274 64.6
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 5.3e-87 325.1 287 62.7
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 6.9e-87 324.7 232 72.4
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.0e-86 323.2 234 71.4
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.0e-86 323.2 232 71.6
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.7e-85 320.1 233 70.0
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.9e-84 316.6 294 62.2
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.9e-84 316.6 268 63.8
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 5.5e-84 315.1 284 64.4
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.1e-83 313.2 201 80.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 3.9e-82 308.9 245 66.5
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.5e-81 306.2 239 66.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.5e-81 306.2 257 64.2
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 3.3e-81 305.8 203 80.3
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 9.6e-81 304.3 205 74.6
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.3e-80 303.9 201 78.1
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.8e-80 302.8 234 67.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 4.8e-80 302.0 205 75.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.9e-79 298.1 215 70.7
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.5e-78 297.0 234 70.1
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.7e-77 293.5 193 79.3
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.4e-76 290.4 201 76.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.5e-76 288.5 233 68.2
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 2.7e-75 286.2 222 71.6
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.6e-75 285.4 235 69.4
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.9e-74 282.3 207 71.5
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.9e-73 280.0 243 61.3
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.2e-70 270.8 243 60.9
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.0e-69 267.7 168 79.8
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.0e-69 267.7 202 68.3
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.8e-69 265.8 229 61.6
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.3e-66 256.5 186 74.2
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.0e-65 253.4 283 53.7
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 5.9e-62 241.9 229 56.3
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.9e-60 236.9 238 52.9
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 7.9e-59 231.5 197 65.0
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.4e-55 219.9 237 54.0
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 5.0e-53 212.2 150 74.0
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.0e-50 204.5 114 85.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 3.1e-47 193.0 148 68.9
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 5.0e-45 185.7 209 53.6
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-41 174.5 151 63.6
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.2e-40 170.2 135 68.1
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.0e-38 163.7 160 58.8
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.0e-37 159.1 139 64.0
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-36 156.4 84 88.1
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-36 156.4 84 88.1
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 4.0e-34 149.4 121 65.3
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-31 141.4 120 65.0
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.4e-31 140.2 159 51.6
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.1e-28 131.3 74 85.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.2e-28 129.4 74 83.8
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.5e-28 129.0 74 83.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 7.2e-28 128.6 74 83.8
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.8e-27 126.7 74 81.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.2e-22 111.3 74 78.4
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.7e-21 107.5 194 36.6
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 7.3e-20 102.1 90 62.2
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.6e-19 100.9 66 80.3
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.0e-17 94.0 70 72.9
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.4e-17 93.2 68 75.0
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 3.7e-16 89.7 68 72.1
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 6.6e-13 79.0 44 84.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 2.5e-12 77.0 64 67.2
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 5.6e-12 75.9 46 87.0
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 9.5e-12 75.1 44 77.3
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 2.8e-11 73.6 82 57.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.0e-11 72.0 70 57.1
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.1e-10 70.1 61 62.3
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.2e-06 58.2 240 24.6
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 7.8e-06 55.5 33 84.8


User provided reference genes

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