Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 0.0e+00 1522.3 799 100.0
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 2.4e-148 530.4 861 44.8
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.7e-146 524.2 842 44.8
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 7.2e-145 518.8 845 43.3
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.1e-144 517.3 840 44.0
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.6e-144 516.5 836 44.5
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 8.7e-143 511.9 840 43.9
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 2.8e-141 506.9 858 43.6
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 6.9e-140 502.3 859 43.3
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 8.5e-138 495.4 840 43.5
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 2.7e-136 490.3 836 42.0
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 3.6e-128 463.4 847 39.9
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 5.5e-121 439.5 810 38.9
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 2.3e-119 434.1 840 39.6
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 5.2e-119 433.0 804 40.3
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 1.2e-118 431.8 820 39.5
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 3.7e-117 426.8 834 39.3
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 7.0e-116 422.5 843 38.0
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 6.1e-112 409.5 779 39.7
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 8.0e-112 409.1 785 39.6
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 1.8e-111 407.9 850 38.5
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 2.3e-111 407.5 829 37.9
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 2.3e-111 407.5 855 37.7
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 8.8e-111 405.6 811 37.9
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.5e-110 404.8 798 39.7
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 4.8e-109 399.8 794 39.4
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 5.4e-108 396.4 921 35.9
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.7e-106 391.3 703 42.1
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 2.3e-103 380.9 827 36.0
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 3.8e-98 363.6 840 35.0
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 3.3e-97 360.5 840 34.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 5.6e-97 359.8 546 44.1
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 2.1e-96 357.8 824 35.4
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 2.8e-96 357.5 670 39.0
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 8.0e-96 355.9 816 35.9
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 1.0e-95 355.5 666 39.0
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.6e-94 350.9 560 43.4
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 2.6e-94 350.9 829 35.3
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 2.6e-94 350.9 549 42.3
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 3.4e-94 350.5 790 37.1
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 3.4e-94 350.5 875 35.2
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 3.7e-93 347.1 841 35.8
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 1.8e-92 344.7 865 33.9
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 9.2e-92 342.4 925 33.1
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 1.1e-89 335.5 846 35.7
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.9e-89 334.7 845 33.6
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 4.3e-89 333.6 854 32.9
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 2.8e-88 330.9 876 33.9
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 1.0e-87 328.9 793 35.1
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.0e-87 328.9 866 33.9
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 2.3e-87 327.8 833 34.5
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 8.9e-87 325.9 594 38.4
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 3.7e-85 320.5 852 33.6
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 3.2e-84 317.4 757 35.7
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 7.0e-84 316.2 877 33.2
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 1.2e-83 315.5 853 33.6
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.2e-83 315.5 804 32.0
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 2.0e-83 314.7 859 32.6
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 3.0e-82 310.8 849 30.5
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 5.0e-82 310.1 885 32.3
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 1.5e-81 308.5 762 32.8
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 4.3e-81 307.0 906 30.9
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 6.2e-80 303.1 500 40.2
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 4.0e-79 300.4 851 33.4
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 5.2e-79 300.1 818 33.3
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 6.8e-79 299.7 815 32.1
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.5e-78 298.5 824 32.5
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 3.7e-77 293.9 660 35.5
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 5.4e-76 290.0 857 32.3
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.7e-74 285.0 817 33.0
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 4.3e-73 280.4 789 32.2
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 7.3e-73 279.6 578 35.1
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 1.2e-70 272.3 831 31.9
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 3.4e-70 270.8 627 36.2
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 4.4e-70 270.4 793 32.5
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.3e-69 268.9 598 35.1
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 2.2e-69 268.1 842 31.7
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 6.4e-69 266.5 601 36.1
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 2.1e-67 261.5 796 31.2
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 2.1e-67 261.5 796 31.2
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 7.8e-67 259.6 797 32.6
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.7e-66 258.5 789 34.0
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 3.0e-66 257.7 780 32.9
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 8.6e-66 256.1 286 51.0
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.5e-65 255.4 819 29.5
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 4.3e-65 253.8 550 37.1
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.5e-62 245.4 754 30.1
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.1e-60 239.2 729 30.7
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 3.2e-60 237.7 811 29.6
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 4.6e-59 233.8 811 29.2
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 6.0e-59 233.4 903 29.3
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 2.6e-54 218.0 871 28.8
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 1.3e-53 215.7 860 28.6
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 1.1e-52 212.6 594 32.5
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 3.0e-50 204.5 667 31.6
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 4.5e-46 190.7 833 28.3
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 9.9e-46 189.5 586 32.3
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 3.8e-45 187.6 611 31.1
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 9.3e-44 183.0 593 30.9
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 8.7e-42 176.4 589 30.4
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 1.9e-41 175.3 802 27.8
FAN10G3273 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.5e-41 174.9 156 59.6
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 1.1e-39 169.5 790 27.6
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.4e-39 168.3 589 29.7
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 6.9e-39 166.8 691 27.9
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 5.8e-38 163.7 718 26.0
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 8.5e-29 133.3 594 28.6
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.5e-20 105.1 151 40.4
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 6.5e-13 80.5 114 44.7
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 2.8e-08 65.1 441 23.6
Dinv43435 Davidia involucrata HOM05D001393 ORTHO05D007477 3.7e-08 64.7 135 35.6


User provided reference genes

Program Settings