Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 4.7e-126 454.5 228 100.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 3.1e-93 345.5 229 74.2
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.6e-92 342.4 230 75.2
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 5.8e-92 341.3 233 73.0
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 6.4e-91 337.8 228 74.6
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 7.9e-89 330.9 227 71.8
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.0e-88 330.5 233 71.7
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.8e-88 329.7 231 71.4
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.9e-87 326.2 229 70.3
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 5.7e-87 324.7 228 69.3
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 5.7e-87 324.7 228 71.1
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 4.8e-86 321.6 231 70.6
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 6.2e-86 321.2 231 70.6
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.1e-85 320.5 223 72.2
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 1.1e-85 320.5 228 68.4
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.4e-85 320.1 223 72.2
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 1.4e-85 320.1 223 72.2
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 9.0e-85 317.4 231 69.3
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 2.0e-84 316.2 224 68.8
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 2.6e-84 315.8 222 69.8
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 3.4e-84 315.5 219 68.9
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 4.5e-84 315.1 220 68.6
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 5.8e-84 314.7 224 68.8
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 5.8e-84 314.7 227 68.7
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.2e-83 312.8 221 69.7
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.8e-83 312.0 223 70.4
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 3.8e-83 312.0 223 70.4
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 8.4e-83 310.8 224 69.2
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.1e-82 310.5 222 68.0
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.9e-82 309.7 231 67.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.2e-82 308.9 223 69.1
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 3.2e-82 308.9 225 66.7
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 4.2e-82 308.5 222 68.5
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 4.2e-82 308.5 231 65.8
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 5.5e-82 308.1 222 69.8
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 5.5e-82 308.1 223 70.4
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 7.1e-82 307.8 222 69.4
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 7.1e-82 307.8 223 68.6
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.2e-81 307.0 221 67.0
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.2e-81 307.0 220 67.7
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 2.1e-81 306.2 213 69.5
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 3.5e-81 305.4 213 69.5
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 3.5e-81 305.4 213 69.5
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 3.5e-81 305.4 216 66.7
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.5e-81 305.4 220 67.3
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 3.5e-81 305.4 228 67.1
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.6e-81 305.1 223 68.2
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 6.1e-81 304.7 213 69.5
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 6.1e-81 304.7 213 69.5
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.0e-80 303.9 224 65.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.3e-80 303.5 212 69.3
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.8e-80 303.1 213 67.6
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 6.7e-80 301.2 227 66.1
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 8.7e-80 300.8 216 67.1
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 8.7e-80 300.8 227 65.6
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.5e-79 300.1 223 65.5
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.5e-79 299.3 235 64.7
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 2.5e-79 299.3 201 70.1
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 4.3e-79 298.5 222 66.2
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 4.3e-79 298.5 222 66.2
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 7.4e-79 297.7 222 66.7
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 7.4e-79 297.7 222 66.7
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.3e-78 297.0 223 65.5
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.3e-78 297.0 222 65.8
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 2.2e-78 296.2 203 68.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 2.2e-78 296.2 203 69.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 2.2e-78 296.2 224 64.3
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 4.8e-78 295.0 222 65.3
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.8e-78 295.0 223 65.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 6.3e-78 294.7 209 67.9
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 8.2e-78 294.3 203 68.5
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.1e-77 293.9 222 64.0
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 1.4e-77 293.5 222 65.3
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.8e-77 293.1 288 55.9
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.8e-77 293.1 233 62.2
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.8e-77 293.1 223 64.1
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.4e-77 292.7 222 64.4
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.4e-77 292.7 222 64.9
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.4e-77 292.7 222 63.5
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.1e-77 292.0 216 68.5
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 5.3e-77 291.6 222 63.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.2e-76 290.4 206 67.5
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.0e-76 289.7 203 69.0
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 3.4e-76 288.9 206 66.0
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.3e-75 287.0 224 65.6
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 1.7e-75 286.6 203 66.5
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.9e-75 285.8 224 62.9
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.9e-74 283.1 222 64.0
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 2.5e-74 282.7 218 63.8
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 9.4e-74 280.8 206 64.6
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 9.4e-74 280.8 222 64.9
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.8e-72 276.6 222 63.1
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.5e-71 273.5 203 65.5
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 7.4e-71 271.2 208 63.5
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 4.8e-70 268.5 211 60.7
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.4e-69 266.9 186 69.9
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 2.4e-69 266.2 210 60.5
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.1e-69 265.8 205 61.0
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 9.1e-69 264.2 206 61.2
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 2.6e-68 262.7 200 64.0
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 3.4e-68 262.3 182 72.0
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.3e-67 260.4 210 58.6
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.9e-67 259.2 222 58.6
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.8e-67 258.8 222 58.6
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 6.5e-67 258.1 212 62.3
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 4.2e-66 255.4 189 69.3
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 7.9e-65 251.1 206 59.2
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 1.0e-64 250.8 212 61.3
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 6.7e-64 248.1 225 56.0
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 6.7e-64 248.1 200 63.5
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 2.0e-63 246.5 225 59.1
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 6.3e-62 241.5 205 62.4
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 6.3e-62 241.5 164 73.8
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.2e-62 241.1 174 69.0
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.8e-61 240.0 200 61.5
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.1e-61 238.8 164 68.9
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-59 232.3 209 57.9
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 8.5e-59 231.1 158 70.9
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.2e-58 229.2 204 52.5
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 7.2e-58 228.0 156 75.6
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.6e-57 226.9 204 53.4
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 3.0e-56 222.6 160 67.5
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.5e-55 220.3 174 61.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 5.7e-55 218.4 210 51.0
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 8.2e-54 214.5 218 48.2
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.1e-53 214.2 218 50.0
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.4e-53 213.8 228 53.9
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 7.0e-53 211.5 231 51.1
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.6e-52 209.5 208 49.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.6e-52 209.5 219 48.9
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 7.7e-52 208.0 204 53.9
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.0e-51 207.6 202 52.0
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 1.7e-51 206.8 210 51.4
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 7.7e-44 181.4 204 49.5
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.0e-43 181.0 149 53.0
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 8.0e-41 171.4 209 47.8
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 8.0e-41 171.4 219 42.5
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.3e-40 169.9 206 40.3
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.0e-40 169.5 203 46.8
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 8.8e-40 167.9 109 73.4
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 2.4e-37 159.8 104 78.8
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 3.5e-36 156.0 159 48.4
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.7e-35 153.7 222 37.8
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.1e-34 151.0 132 61.4
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 1.2e-33 147.5 218 39.9
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 8.9e-32 141.4 219 38.4
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 1.2e-31 141.0 95 69.5
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.5e-31 138.3 102 65.7
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 6.8e-24 115.2 131 44.3
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.6e-23 113.2 184 41.3
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 4.4e-23 112.5 87 56.3
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 8.3e-22 108.2 70 72.9
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 4.1e-21 105.9 177 37.3
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 8.9e-16 88.2 205 36.1
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 3.7e-14 82.8 71 60.6
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.7e-12 76.6 85 48.2
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 6.8e-08 62.0 42 66.7
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.7e-06 57.4 49 55.1
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 8.4e-06 55.1 48 50.0


User provided reference genes

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