Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 3.0e-79 298.9 209 100.0
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 6.0e-51 204.9 202 77.2
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 1.5e-49 200.3 204 77.0
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.5e-49 200.3 201 79.1
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 2.5e-49 199.5 202 77.2
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 5.6e-49 198.4 202 78.2
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 9.5e-49 197.6 202 77.2
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.2e-48 197.2 211 76.8
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 2.8e-48 196.1 211 69.7
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 4.7e-48 195.3 202 78.2
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 4.7e-48 195.3 202 78.2
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.1e-48 194.5 202 77.7
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 1.8e-47 193.4 211 69.2
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 2.4e-47 193.0 203 77.8
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.1e-47 192.6 202 77.7
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 4.0e-47 192.2 203 74.9
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 5.2e-47 191.8 202 77.7
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.2e-47 191.8 202 77.7
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.8e-47 191.4 202 76.7
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.5e-46 190.3 203 70.9
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 1.5e-46 190.3 203 70.0
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.5e-46 190.3 201 73.6
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 2.0e-46 189.9 204 77.9
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 2.0e-46 189.9 198 77.8
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 7.6e-46 188.0 203 75.9
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 2.2e-45 186.4 230 67.4
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 6.4e-45 184.9 202 73.8
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 6.4e-45 184.9 203 75.4
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 8.4e-45 184.5 205 73.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 8.4e-45 184.5 201 72.1
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 8.4e-45 184.5 203 74.9
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.4e-44 183.7 205 74.1
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.9e-44 183.3 203 66.0
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 3.2e-44 182.6 205 71.7
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 4.2e-44 182.2 205 74.1
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 7.1e-44 181.4 221 71.9
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 2.7e-43 179.5 203 72.4
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 3.5e-43 179.1 198 74.7
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 3.5e-43 179.1 203 72.9
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 4.6e-43 178.7 196 74.5
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 4.6e-43 178.7 196 74.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 1.0e-42 177.6 204 72.5
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.3e-42 177.2 206 69.9
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.3e-42 176.4 210 66.7
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 2.3e-42 176.4 210 66.7
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 3.0e-42 176.0 205 70.2
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 3.9e-42 175.6 207 59.9
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 5.1e-42 175.3 205 69.3
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.5e-41 173.7 203 73.9
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 5.6e-41 171.8 206 72.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 5.6e-41 171.8 203 70.4
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 7.3e-41 171.4 206 71.4
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 7.3e-41 171.4 201 70.1
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 1.3e-40 170.6 192 75.0
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.1e-40 169.9 202 73.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.8e-40 169.5 201 72.1
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 4.8e-40 168.7 181 77.9
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 4.8e-40 168.7 206 71.4
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 4.8e-40 168.7 201 71.6
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 4.8e-40 168.7 217 66.8
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.4e-39 166.4 201 72.1
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.4e-39 166.4 201 72.1
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 3.1e-39 166.0 194 73.7
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 5.3e-39 165.2 203 72.4
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 9.0e-39 164.5 199 70.9
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.0e-38 163.3 194 73.7
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 4.4e-38 162.2 197 71.6
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 1.3e-37 160.6 200 64.0
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 2.2e-37 159.8 258 49.2
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 2.9e-37 159.5 207 69.6
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 6.4e-37 158.3 208 68.8
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 8.4e-37 157.9 201 66.2
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.9e-36 156.8 183 76.5
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 7.1e-36 154.8 207 70.0
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.6e-35 153.7 202 66.8
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 2.1e-35 153.3 201 63.2
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 2.1e-35 153.3 202 68.8
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.0e-35 151.8 205 65.9
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 7.8e-35 151.4 199 60.8
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 2.3e-34 149.8 203 66.5
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 2.3e-34 149.8 199 53.8
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 2.3e-34 149.8 202 67.8
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.0e-34 149.4 205 65.4
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 5.1e-34 148.7 202 63.4
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 8.7e-34 147.9 196 68.4
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 1.1e-33 147.5 200 66.0
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 4.3e-33 145.6 199 70.4
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 9.6e-33 144.4 200 53.5
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 1.6e-32 143.7 199 60.8
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 2.1e-32 143.3 201 44.3
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 2.1e-32 143.3 201 44.3
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.1e-32 143.3 201 44.3
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 2.1e-32 143.3 201 44.3
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 2.1e-32 143.3 141 70.2
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 2.8e-32 142.9 197 60.9
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 2.8e-32 142.9 200 67.0
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 8.1e-32 141.4 203 64.0
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 8.1e-32 141.4 203 65.5
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 1.1e-31 141.0 206 64.1
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.4e-31 140.6 200 62.5
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.8e-31 140.2 203 61.6
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.8e-31 140.2 204 65.2
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 2.4e-31 139.8 180 55.0
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 4.0e-31 139.0 198 49.5
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.2e-30 137.5 206 64.6
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.2e-30 137.5 192 62.0
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.5e-30 137.1 211 62.6
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 2.6e-30 136.3 210 54.8
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 5.8e-30 135.2 104 65.4
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 2.2e-29 133.3 204 62.3
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-29 132.1 190 43.2
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.0e-27 125.2 206 51.0
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 7.9e-27 124.8 202 51.5
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.4e-23 113.2 142 77.5
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 3.1e-23 112.8 206 37.9
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 3.1e-23 112.8 202 50.0
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.6e-22 109.8 223 45.3
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-21 105.5 197 52.8
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 4.9e-21 105.5 197 52.8
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 4.9e-21 105.5 197 52.8
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 4.9e-21 105.5 197 52.8
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.5e-20 103.2 212 45.3
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 2.5e-20 103.2 199 56.3
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 4.2e-20 102.4 197 54.3
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 4.2e-20 102.4 197 54.3
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 4.6e-19 99.0 106 52.8
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-19 98.6 206 37.9
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 6.0e-19 98.6 206 37.9
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-18 97.1 206 37.4
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 3.9e-18 95.9 206 37.4
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 3.3e-17 92.8 139 68.3
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.3e-17 92.8 150 67.3
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 3.3e-17 92.8 181 54.7
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 7.4e-17 91.7 149 68.5
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 1.6e-16 90.5 138 49.3
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.4e-15 87.4 141 46.8
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.4e-14 82.8 149 51.0
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 1.7e-13 80.5 203 39.9
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 3.8e-13 79.3 77 84.4
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 3.5e-11 72.8 167 33.5
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 1.0e-10 71.2 114 60.5
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.3e-10 70.9 92 43.5
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 3.9e-10 69.3 195 50.3
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 5.7e-09 65.5 59 64.4
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 1.6e-08 63.9 118 56.8
ATR0329G069 Amborella trichopoda HOM05D005036 ORTHO05D005881 5.3e-07 58.9 154 29.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 3.4e-06 56.2 64 39.1


User provided reference genes

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