Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 5.5e-36 153.7 73 100.0
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 7.5e-33 143.3 73 91.8
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 9.7e-33 142.9 73 91.8
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.7e-32 142.1 73 90.4
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 2.2e-32 141.7 74 91.9
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.2e-32 141.7 74 91.9
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 3.7e-32 141.0 73 91.8
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.8e-32 140.6 71 91.5
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 6.3e-32 140.2 73 89.0
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.3e-32 140.2 74 90.5
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.3e-32 140.2 74 90.5
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 6.3e-32 140.2 74 90.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 6.3e-32 140.2 73 90.4
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 1.1e-31 139.4 73 90.4
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.1e-31 139.4 73 90.4
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.8e-31 138.7 73 86.3
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.8e-31 138.7 73 87.7
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 2.4e-31 138.3 73 84.9
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.1e-31 137.9 76 88.2
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 3.1e-31 137.9 75 88.0
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 3.1e-31 137.9 73 89.0
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 3.1e-31 137.9 73 87.7
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.3e-31 137.1 71 85.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 5.3e-31 137.1 74 87.8
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 5.3e-31 137.1 74 87.8
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 5.3e-31 137.1 71 88.7
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 7.0e-31 136.7 73 87.7
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 7.0e-31 136.7 73 90.4
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 9.1e-31 136.3 73 87.7
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.2e-30 136.0 74 89.2
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.6e-30 135.6 73 84.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 2.0e-30 135.2 73 84.9
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.0e-30 135.2 73 87.7
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.0e-30 135.2 73 87.7
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 2.0e-30 135.2 71 91.5
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.7e-30 134.8 73 82.2
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 2.7e-30 134.8 74 87.8
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.7e-30 134.8 67 91.0
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 2.7e-30 134.8 71 85.9
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 2.7e-30 134.8 74 89.2
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.5e-30 134.4 73 86.3
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 3.5e-30 134.4 73 84.9
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 87.8
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 87.8
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.5e-30 134.4 74 87.8
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 3.5e-30 134.4 71 90.1
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.9e-30 133.7 73 86.3
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 5.9e-30 133.7 74 82.4
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 5.9e-30 133.7 74 82.4
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 5.9e-30 133.7 71 84.5
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 7.7e-30 133.3 73 83.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 7.7e-30 133.3 74 86.5
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 7.7e-30 133.3 74 86.5
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.0e-29 132.9 73 84.9
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.0e-29 132.9 71 84.5
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.3e-29 132.5 73 83.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.3e-29 132.5 73 83.6
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.3e-29 132.5 71 83.1
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 2.2e-29 131.7 73 82.2
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 2.2e-29 131.7 73 83.6
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 2.9e-29 131.3 71 84.5
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.8e-29 131.0 71 85.9
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 5.0e-29 130.6 74 82.4
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 5.0e-29 130.6 74 83.8
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 5.0e-29 130.6 73 83.6
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 5.0e-29 130.6 71 84.5
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 6.5e-29 130.2 73 80.8
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 6.5e-29 130.2 71 87.3
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 8.5e-29 129.8 73 83.6
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-28 129.4 71 85.9
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-28 129.4 71 85.9
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.1e-28 129.4 71 84.5
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.1e-28 129.4 73 83.6
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.5e-28 129.0 73 83.6
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 81.7
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 81.7
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.9e-28 128.6 74 83.8
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 1.9e-28 128.6 71 81.7
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.2e-28 127.5 71 84.5
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 9.4e-28 126.3 73 82.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.2e-27 125.9 69 85.5
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 78.1
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 80.8
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 80.8
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 80.8
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 80.8
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.7e-27 124.0 71 81.7
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 4.7e-27 124.0 73 79.5
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 4.7e-27 124.0 71 83.1
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.7e-27 124.0 73 80.8
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.1e-27 123.6 69 81.2
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 6.1e-27 123.6 73 79.5
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 8.0e-27 123.2 79 74.7
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 8.0e-27 123.2 71 76.1
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.0e-26 122.9 69 78.3
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 1.4e-26 122.5 71 76.1
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 78.1
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 71 80.3
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 78.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 78.1
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 3.0e-26 121.3 97 61.9
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.0e-26 121.3 71 76.1
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 4.0e-26 120.9 74 78.4
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 6.8e-26 120.2 95 63.2
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.8e-26 120.2 65 83.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 8.8e-26 119.8 69 78.3
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.2e-25 119.4 73 75.3
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.2e-25 119.4 101 59.4
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.0e-25 118.6 71 76.1
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 2.6e-25 118.2 61 85.2
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.6e-25 118.2 90 65.6
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.7e-24 115.5 73 74.0
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 2.2e-24 115.2 100 59.0
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 8.3e-24 113.2 63 77.8
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.1e-23 112.8 71 73.2
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.4e-23 112.5 73 69.9
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.4e-23 112.5 66 83.3
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.8e-23 112.1 63 81.0
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 3.1e-23 111.3 73 69.9
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 5.4e-23 110.5 62 82.3
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 5.4e-23 110.5 62 82.3
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 5.4e-23 110.5 62 82.3
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 5.4e-23 110.5 62 82.3
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 5.4e-23 110.5 62 82.3
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 5.4e-23 110.5 62 82.3
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 7.0e-23 110.2 63 79.4
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 7.0e-23 110.2 63 79.4
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 7.0e-23 110.2 63 79.4
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 7.0e-23 110.2 61 77.0
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 7.0e-23 110.2 63 76.2
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 9.1e-23 109.8 63 79.4
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 9.1e-23 109.8 63 79.4
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 9.1e-23 109.8 63 77.8
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 9.1e-23 109.8 66 77.3
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 9.1e-23 109.8 63 79.4
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.2e-22 109.4 69 73.9
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 2.7e-22 108.2 57 93.0
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.7e-22 108.2 73 69.9
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 2.7e-22 108.2 73 65.8
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 2.7e-22 108.2 56 87.5
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.5e-22 107.5 56 87.5
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.9e-22 107.1 83 65.1
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 7.7e-22 106.7 56 87.5
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.3e-21 105.9 57 80.7
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 1.7e-21 105.5 56 85.7
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 6.6e-21 103.6 56 82.1
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 8.6e-21 103.2 124 46.8
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-20 102.1 75 68.0
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.9e-20 102.1 65 72.3
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.9e-20 102.1 89 57.3
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 2.5e-20 101.7 64 73.4
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 2.5e-20 101.7 64 73.4
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 2.5e-20 101.7 56 82.1
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 5.5e-20 100.5 58 74.1
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.6e-19 99.0 56 83.9
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.6e-19 99.0 56 80.4
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.8e-19 98.2 65 69.2
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 6.1e-19 97.1 66 62.1
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 1.0e-18 96.3 56 80.4
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 5.2e-18 94.0 56 73.2
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.2e-17 92.8 56 76.8
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.5e-17 92.4 58 77.6
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 1.5e-17 92.4 47 87.2
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.6e-17 91.7 56 73.2
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.6e-17 91.7 56 75.0
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 4.9e-16 87.4 56 71.4
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 3.2e-15 84.7 56 67.9
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.1e-15 84.3 62 54.8
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.4e-15 84.0 56 62.5
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.6e-14 82.4 62 51.6
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 2.0e-14 82.0 49 73.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 2.0e-14 82.0 63 60.3
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.6e-14 80.9 58 70.7
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.9e-14 80.5 46 82.6
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.0e-13 79.7 55 69.1
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 1.7e-13 79.0 56 64.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.9e-13 78.2 40 85.0
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 1.9e-12 75.5 45 84.4
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 7.3e-12 73.6 40 85.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 2.1e-11 72.0 38 81.6
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.2e-09 66.2 34 82.4
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 6.4e-08 60.5 40 67.5
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 8.3e-08 60.1 51 54.9
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 4.1e-07 57.8 54 46.3


User provided reference genes

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