Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 0.0e+00 1112.1 657 100.0
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.5e-164 583.9 641 56.3
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 2.4e-162 576.6 641 56.2
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.2e-161 574.3 640 55.5
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.5e-161 573.9 638 55.5
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 1.3e-160 570.9 651 53.9
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 9.3e-159 564.7 671 53.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 6.5e-152 542.0 671 51.4
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 2.5e-151 540.0 668 51.8
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 2.3e-149 533.5 545 57.1
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 7.4e-148 528.5 653 51.3
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 7.7e-145 518.5 596 55.9
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 7.7e-145 518.5 485 62.5
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.7e-144 517.3 669 49.2
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 4.2e-143 512.7 667 48.1
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 2.7e-142 510.0 668 50.4
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 2.3e-141 506.9 635 49.8
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 4.8e-139 499.2 672 47.3
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 4.5e-137 492.7 678 46.6
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 2.9e-136 490.0 651 49.9
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 3.8e-136 489.6 661 48.0
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.5e-132 477.6 629 49.1
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.6e-132 476.9 635 48.0
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 2.9e-128 463.4 638 48.0
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 3.8e-128 463.0 637 49.1
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 5.0e-128 462.6 655 47.6
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 2.5e-127 460.3 638 47.5
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 1.6e-126 457.6 619 50.2
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 3.6e-126 456.4 553 50.5
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 4.7e-126 456.1 642 47.4
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 1.0e-125 454.9 654 45.7
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 4.0e-125 453.0 638 47.0
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 5.2e-125 452.6 562 50.2
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 2.0e-124 450.7 646 46.9
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.6e-124 450.3 625 48.3
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 6.3e-123 445.7 562 49.8
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 8.3e-123 445.3 668 45.7
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 4.1e-122 443.0 655 44.9
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 5.4e-122 442.6 677 45.5
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 7.0e-122 442.2 629 44.7
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 7.7e-121 438.7 572 49.3
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 9.5e-119 431.8 672 44.3
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.4e-117 427.9 663 44.6
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 9.8e-116 421.8 551 49.7
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 1.1e-114 418.3 425 56.9
SalBow5G0325 Salvia bowleyana HOM05D007670 ORTHO05D009646 3.1e-114 416.8 676 43.5
SalBow5G5044 Salvia bowleyana HOM05D007670 ORTHO05D009646 2.0e-113 414.1 676 43.5
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 1.3e-112 411.4 672 42.7
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 4.3e-111 406.4 696 41.5
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 1.3e-107 394.8 713 39.8
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 7.8e-105 385.6 627 42.4
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.1e-103 381.7 426 52.3
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 5.8e-100 369.4 435 50.6
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 1.7e-91 341.3 302 63.2
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 5.4e-90 336.3 385 49.4
Dinv20593 Davidia involucrata HOM05D007670 ORTHO05D009646 4.6e-89 333.2 457 47.9
HanXRQChr05g0156201 Helianthus annuus HOM05D007670 ORTHO05D009646 1.7e-80 304.7 548 38.5
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 1.9e-79 301.2 324 54.3
QL10p006759 Quercus lobata HOM05D007670 ORTHO05D009646 2.6e-76 290.8 464 44.4
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.3e-75 288.5 471 42.9
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 1.7e-72 278.1 279 55.6
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 6.6e-72 276.2 624 40.4
Solyc03g112120.3 Solanum lycopersicum HOM05D007670 ORTHO05D009646 7.3e-71 272.7 276 55.1
Glyma.17G124800 Glycine max HOM05D007670 ORTHO05D009646 1.3e-70 271.9 422 46.0
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 9.0e-69 265.8 640 35.0
Cpa.g.sc159.12 Carica papaya HOM05D007670 ORTHO05D009646 8.4e-67 259.2 629 40.9
Actinidia24601 Actinidia chinensis HOM05D007670 ORTHO05D009646 1.7e-59 235.0 242 52.9
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.8e-53 214.9 230 51.7
Glyma.17G124700 Glycine max HOM05D007670 ORTHO05D009646 6.9e-53 213.0 236 53.0
Zm00001eb143920 Zea mays HOM05D007670 ORTHO05D009646 9.7e-39 166.0 423 32.9
Peaxi162Scf00089g01229 Petunia axillaris HOM05D007670 ORTHO05D009646 2.2e-38 164.9 386 37.3
Solyc03g112110.1 Solanum lycopersicum HOM05D007670 ORTHO05D009646 1.2e-36 159.1 374 36.4
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 1.0e-35 156.0 164 48.8
TAR629G0999 Trochodendron aralioides HOM05D007670 ORTHO05D009646 8.8e-32 142.9 252 42.1
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.4e-31 140.6 286 34.6
Zm00001eb393770 Zea mays HOM05D007670 ORTHO05D009646 3.1e-29 134.4 342 34.5
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.6e-28 131.3 295 31.5
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.6e-28 131.3 295 31.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.9e-26 125.2 233 34.3
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.1e-25 120.2 297 33.7
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.4e-24 119.0 236 34.3
Sabra15G0107400 Salix brachista HOM05D007670 ORTHO05D009646 3.9e-24 117.5 482 28.6
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 9.7e-23 112.8 190 39.5
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.7e-22 112.1 271 31.0
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 5.3e-21 107.1 442 33.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 8.8e-16 89.7 230 30.4
QL10p006748 Quercus lobata HOM05D007670 ORTHO05D009646 2.0e-15 88.6 139 43.2
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 9.1e-13 79.7 280 26.1
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 6.5e-11 73.6 134 35.8
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.5e-10 71.6 222 28.4
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 3.2e-10 71.2 222 28.4
CsaV3_1G008900 Cucumis sativus L. HOM05D007670 ORTHO05D009646 7.2e-10 70.1 138 43.5
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 7.2e-10 70.1 254 26.0
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 1.6e-09 68.9 231 26.4
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.7e-09 68.2 222 27.5
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 4.0e-08 64.3 233 26.2
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 4.0e-08 64.3 233 26.6
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 4.0e-08 64.3 174 28.2
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.2e-07 62.8 232 26.3
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.2e-07 62.8 241 24.9
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.2e-07 62.8 234 24.8
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 1.2e-07 62.8 234 24.8
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.5e-07 62.4 187 27.8
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 1.5e-07 62.4 340 23.8
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.0e-07 62.0 223 24.2
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 2.0e-07 62.0 223 24.2
MELO3C031542.2 Cucumis melo HOM05D007670 ORTHO05D009646 2.6e-07 61.6 101 45.5
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 2.6e-07 61.6 273 24.9
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 2.6e-07 61.6 247 25.9
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 2.6e-07 61.6 222 24.3
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 3.4e-07 61.2 260 25.8
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 3.4e-07 61.2 222 24.3
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 4.4e-07 60.8 196 25.5
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 4.4e-07 60.8 308 25.3
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 5.7e-07 60.5 248 24.6
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 7.5e-07 60.1 240 25.0
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 7.5e-07 60.1 386 23.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 9.8e-07 59.7 268 25.0
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 9.8e-07 59.7 223 25.1
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 1.3e-06 59.3 222 26.1
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.7e-06 58.9 222 23.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.7e-06 58.9 208 26.0
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 1.7e-06 58.9 222 23.9
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 1.7e-06 58.9 241 24.9
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 3.7e-06 57.8 222 23.9
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 4.8e-06 57.4 276 23.6
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 4.8e-06 57.4 209 23.9
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 6.3e-06 57.0 254 24.0
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 6.3e-06 57.0 440 24.1
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 6.3e-06 57.0 190 24.2
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 8.3e-06 56.6 172 23.3


User provided reference genes

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