Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 2.8e-166 588.6 307 100.0
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 3.2e-85 319.3 309 58.6
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.7e-84 316.2 309 57.9
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 3.0e-83 312.8 330 55.5
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 7.4e-82 308.1 315 55.6
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 1.3e-81 307.4 310 55.8
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 6.2e-81 305.1 310 55.5
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 8.1e-81 304.7 315 55.6
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.8e-80 303.5 308 56.5
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.5e-79 300.4 308 55.8
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 4.9e-78 295.4 307 55.4
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 8.4e-78 294.7 308 54.9
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 1.4e-77 293.9 311 54.7
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 9.3e-77 291.2 308 55.5
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.6e-76 290.4 310 52.9
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 2.7e-76 289.7 349 49.6
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 3.5e-76 289.3 301 55.5
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.0e-75 287.7 307 54.1
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.8e-75 287.0 310 52.6
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 8.7e-75 284.6 295 56.3
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.1e-74 284.3 341 49.3
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 4.3e-74 282.3 341 51.0
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 9.6e-74 281.2 308 55.2
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.1e-73 280.0 330 51.2
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.4e-72 276.6 309 52.1
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 4.1e-72 275.8 310 52.3
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.5e-71 273.9 309 52.1
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 2.6e-71 273.1 309 51.1
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.5e-71 272.3 309 51.5
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.2e-70 270.0 311 50.8
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.5e-70 268.5 283 53.4
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 3.2e-69 266.2 338 48.2
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.2e-68 264.2 299 50.8
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.6e-68 263.8 283 53.0
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.1e-68 263.5 315 50.2
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.6e-68 262.7 310 49.7
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.6e-68 262.7 308 51.0
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 4.6e-68 262.3 315 49.8
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 4.6e-68 262.3 309 51.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 6.1e-68 261.9 304 51.3
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.1e-68 261.9 283 52.7
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 7.9e-68 261.5 311 48.9
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.3e-67 260.8 309 50.2
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.3e-67 260.0 257 53.3
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 1.5e-66 257.3 309 49.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.5e-66 256.5 280 52.1
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 2.5e-66 256.5 318 47.5
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 2.5e-66 256.5 301 52.2
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.5e-66 256.5 309 49.5
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 4.3e-66 255.8 286 51.7
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 5.7e-66 255.4 339 47.2
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.7e-66 255.4 310 47.7
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 7.4e-66 255.0 280 52.9
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.3e-65 254.2 305 49.5
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 1.6e-65 253.8 308 47.7
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 8.2e-65 251.5 307 49.8
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 8.2e-65 251.5 295 48.8
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.1e-64 251.1 309 49.8
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 1.4e-64 250.8 314 47.5
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 3.1e-64 249.6 315 49.2
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 5.3e-64 248.8 299 47.8
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 5.3e-64 248.8 299 48.5
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.0e-63 246.9 231 54.1
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 1.3e-62 244.2 314 46.5
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.7e-62 243.8 301 48.8
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 2.2e-62 243.4 307 46.9
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 5.0e-62 242.3 284 50.4
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 6.5e-62 241.9 303 47.9
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 8.5e-62 241.5 309 45.6
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 3.2e-61 239.6 307 48.2
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 9.4e-61 238.0 300 49.7
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.2e-60 237.7 303 50.8
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.1e-60 236.9 347 44.4
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.0e-59 234.6 309 47.2
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 2.3e-59 233.4 305 46.2
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 5.1e-59 232.3 311 47.6
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 6.7e-59 231.9 302 48.0
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.8e-59 231.5 305 49.5
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 4.4e-58 229.2 333 42.0
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.7e-57 227.3 365 41.6
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 4.8e-57 225.7 323 44.3
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 6.3e-57 225.3 328 44.2
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.1e-56 224.6 310 45.5
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 4.1e-56 222.6 305 46.6
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 5.3e-56 222.2 310 46.1
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 6.9e-56 221.9 310 46.1
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 9.1e-56 221.5 291 47.1
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.2e-55 221.1 244 53.7
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.0e-55 220.3 310 44.8
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 5.9e-55 218.8 310 44.8
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-54 217.2 310 43.5
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 6.5e-54 215.3 304 43.8
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 8.5e-54 214.9 304 43.8
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.9e-53 213.8 237 53.6
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.9e-53 213.8 312 43.3
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 2.5e-53 213.4 310 43.2
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.2e-53 213.0 267 48.3
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 4.2e-53 212.6 310 43.5
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 5.5e-53 212.2 289 45.7
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 5.5e-53 212.2 348 40.5
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 7.2e-53 211.8 269 44.6
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 7.2e-53 211.8 304 44.4
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.2e-52 211.1 309 44.7
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.1e-52 210.3 307 43.3
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 2.7e-52 209.9 311 43.1
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.6e-52 209.5 299 44.5
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 4.7e-52 209.1 310 43.2
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 4.7e-52 209.1 314 42.4
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.4e-51 207.6 310 44.2
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 3.9e-51 206.1 294 43.2
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 3.9e-51 206.1 294 43.2
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.9e-51 206.1 248 47.2
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 5.2e-51 205.7 307 45.6
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 3.3e-50 203.0 225 49.8
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.3e-50 203.0 309 42.4
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 4.4e-50 202.6 280 42.9
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 8.2e-49 198.4 280 45.7
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.5e-45 186.8 310 41.0
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 6.1e-44 182.2 225 49.3
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 2.3e-43 180.3 238 47.9
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 3.0e-43 179.9 238 47.9
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 5.7e-42 175.6 183 53.0
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 5.9e-39 165.6 309 37.5
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.0e-38 164.9 184 50.0
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.2e-38 163.7 132 58.3
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 5.0e-38 162.5 260 44.2
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.2e-34 151.4 314 36.3
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.5e-34 151.0 290 39.0
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 2.0e-34 150.6 293 35.5
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.3e-33 147.9 299 36.1
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 9.1e-32 141.7 230 43.9
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 9.1e-32 141.7 309 35.9
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 3.8e-30 136.3 210 36.2
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.6e-28 131.0 242 36.4
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 6.8e-27 125.6 159 43.4
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 4.4e-26 122.9 258 32.6
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 4.9e-25 119.4 157 43.9
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 3.1e-24 116.7 199 40.2
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 6.6e-22 109.0 203 37.9
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 8.6e-22 108.6 244 35.2
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 1.9e-21 107.5 140 43.6
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 3.3e-21 106.7 237 35.9
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 8.9e-19 98.6 134 44.0
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 8.3e-17 92.0 216 33.3
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 3.0e-14 83.6 63 61.9
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 1.6e-12 77.8 130 33.1
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 3.1e-11 73.6 218 26.1
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 5.2e-11 72.8 90 38.9
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 1.2e-10 71.6 97 49.5
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.6e-10 70.5 175 27.4
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 2.9e-09 67.0 70 52.9


User provided reference genes

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