Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0909 Cannabis sativa HOM05D008019 ORTHO05D010184 4.3e-82 307.8 138 100.0
QL04p007219 Quercus lobata HOM05D008019 ORTHO05D010184 4.4e-58 228.0 133 77.4
Cfa010760 Carpinus fangiana HOM05D008019 ORTHO05D010184 2.0e-55 219.2 138 73.9
TWI09G1168 Tripterygium wilfordii HOM05D008019 ORTHO05D010184 3.5e-55 218.4 145 67.6
VMungo1127G0775 Vigna mungo HOM05D008019 ORTHO05D010184 5.9e-55 217.6 138 68.8
Haze_03214 Corylus avellana HOM05D008019 ORTHO05D010184 7.7e-55 217.2 138 73.2
Prupe.2G012100 Prunus persica HOM05D008019 ORTHO05D010184 5.0e-54 214.5 124 75.0
Ciclev10033035m.g Citrus clementina HOM05D008019 ORTHO05D010184 6.5e-54 214.2 108 84.3
Phvul.011G212700 Phaseolus vulgaris HOM05D008019 ORTHO05D010184 6.5e-54 214.2 138 67.4
RcHm_v2.0_Chr1g0315801 Rosa chinensis HOM05D008019 ORTHO05D010184 8.5e-54 213.8 125 75.2
Glyma.12G238000 Glycine max HOM05D008019 ORTHO05D010184 4.2e-53 211.5 139 66.9
PGR044G0644 Punica granatum HOM05D008019 ORTHO05D010184 5.5e-53 211.1 127 73.2
MD02G1313500 Malus domestica HOM05D008019 ORTHO05D010184 9.4e-53 210.3 127 74.8
TAR623G0854 Trochodendron aralioides HOM05D008019 ORTHO05D010184 9.4e-53 210.3 124 74.2
CSS0044570 Camellia sinensis var. sinensis HOM05D008019 ORTHO05D010184 2.7e-52 208.8 127 72.4
Dinv43452 Davidia involucrata HOM05D008019 ORTHO05D010184 3.6e-52 208.4 124 71.8
Thecc.01G411900 Theobroma cacao HOM05D008019 ORTHO05D010184 4.7e-52 208.0 137 67.2
GSVIVG01032075001 Vitis vinifera HOM05D008019 ORTHO05D010184 6.1e-52 207.6 106 83.0
FAN01G0739 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.0e-51 206.8 131 73.3
TAR623G1004 Trochodendron aralioides HOM05D008019 ORTHO05D010184 1.0e-51 206.8 124 72.6
FvH4_7g00910 Fragaria vesca HOM05D008019 ORTHO05D010184 1.4e-51 206.5 140 70.0
Nn2g15438 Nelumbo nucifera HOM05D008019 ORTHO05D010184 1.4e-51 206.5 126 73.0
Rhsim07G0054900 Rhododendron simsii HOM05D008019 ORTHO05D010184 1.4e-51 206.5 128 73.4
FAN06G1027 Fragaria x ananassa HOM05D008019 ORTHO05D010184 1.8e-51 206.1 140 70.0
Lj3g0025736 Lotus japonicus HOM05D008019 ORTHO05D010184 1.8e-51 206.1 125 68.8
Potri.001G268000 Populus trichocarpa HOM05D008019 ORTHO05D010184 1.8e-51 206.1 126 73.8
TPR.G1886 Trifolium pratense HOM05D008019 ORTHO05D010184 1.8e-51 206.1 126 69.0
ECA248G1827 Erigeron canadensis HOM05D008019 ORTHO05D010184 3.0e-51 205.3 109 78.9
Actinidia31058 Actinidia chinensis HOM05D008019 ORTHO05D010184 5.2e-51 204.5 108 80.6
Cc02_g27810 Coffea canephora HOM05D008019 ORTHO05D010184 5.2e-51 204.5 139 64.7
Manes.07G005100 Manihot esculenta HOM05D008019 ORTHO05D010184 5.2e-51 204.5 134 69.4
HanXRQChr01g0016161 Helianthus annuus HOM05D008019 ORTHO05D010184 1.5e-50 203.0 113 76.1
Oeu010780.1 Olea europaea HOM05D008019 ORTHO05D010184 1.5e-50 203.0 118 74.6
Potri.009G062400 Populus trichocarpa HOM05D008019 ORTHO05D010184 2.0e-50 202.6 128 73.4
Aqoxy7G00800 Aquilegia oxysepala HOM05D008019 ORTHO05D010184 2.6e-50 202.2 130 67.7
Eucgr.J01265 Eucalyptus grandis HOM05D008019 ORTHO05D010184 2.6e-50 202.2 129 69.8
arahy.Tifrunner.gnm1.ann1.SF3C2I Arachis hypogaea HOM05D008019 ORTHO05D010184 4.4e-50 201.4 125 68.8
arahy.Tifrunner.gnm1.ann1.V37GBM Arachis hypogaea HOM05D008019 ORTHO05D010184 4.4e-50 201.4 125 68.8
SGA_v2.0_scaffold167G38441 Striga asiatica HOM05D008019 ORTHO05D010184 4.4e-50 201.4 130 66.2
Lj9A631G50 Lonicera japonica HOM05D008019 ORTHO05D010184 7.4e-50 200.7 116 72.4
MSTRG.17046 Avicennia marina HOM05D008019 ORTHO05D010184 1.7e-49 199.5 118 72.9
ClCG09G004230 Citrullus lanatus HOM05D008019 ORTHO05D010184 2.2e-49 199.1 104 77.9
COL.COLO4_23925 Corchorus olitorius HOM05D008019 ORTHO05D010184 2.8e-49 198.7 115 73.0
MBI04_g13624_MAGBIO Magnolia biondii HOM05D008019 ORTHO05D010184 2.8e-49 198.7 104 79.8
Gohir.A12G094001 Gossypium hirsutum HOM05D008019 ORTHO05D010184 1.1e-48 196.8 107 77.6
MELO3C023543.2 Cucumis melo HOM05D008019 ORTHO05D010184 1.8e-48 196.1 104 77.9
CsaV3_7G031160 Cucumis sativus L. HOM05D008019 ORTHO05D010184 4.1e-48 194.9 104 77.9
Lsat_1_v5_gn_1_107820 Lactuca sativa HOM05D008019 ORTHO05D010184 5.3e-48 194.5 120 69.2
Duzib138G0215 Durio zibethinus HOM05D008019 ORTHO05D010184 1.2e-47 193.4 136 65.4
FAN10G3815 Fragaria x ananassa HOM05D008019 ORTHO05D010184 2.0e-47 192.6 138 66.7
vmacro13657 Vaccinium macrocarpon HOM05D008019 ORTHO05D010184 2.6e-47 192.2 177 53.1
CAN.G1155.15 Capsicum annuum HOM05D008019 ORTHO05D010184 3.5e-47 191.8 105 75.2
CDE05G1162 Ceratophyllum demersum HOM05D008019 ORTHO05D010184 1.3e-46 189.9 109 73.4
SalBow5G2002 Salvia bowleyana HOM05D008019 ORTHO05D010184 1.3e-46 189.9 109 71.6
THA.LOC104819690 Tarenaya hassleriana HOM05D008019 ORTHO05D010184 1.7e-46 189.5 137 61.3
Os09g0485800 Oryza sativa ssp. japonica HOM05D008019 ORTHO05D010184 5.0e-46 188.0 105 75.2
Gorai.008G105200 Gossypium raimondii HOM05D008019 ORTHO05D010184 2.5e-45 185.7 114 70.2
unitig_750.g28450 Utricularia gibba HOM05D008019 ORTHO05D010184 5.5e-45 184.5 109 69.7
Sabra09G0046100 Salix brachista HOM05D000752 ORTHO05D000572 1.6e-44 183.0 91 84.6
SEGI_23902 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 6.8e-43 177.6 104 70.2
FAN03G3138 Fragaria x ananassa HOM05D008019 ORTHO05D010184 4.8e-41 171.4 101 75.2
Pp3c14_7420 Physcomitrium patens HOM05D008019 ORTHO05D010184 5.4e-40 167.9 117 59.8
Migut.B01317 Erythranthe guttata HOM05D008019 ORTHO05D010184 7.7e-39 164.1 88 77.3
Sed0006336 Sechium edule HOM05D008019 ORTHO05D010184 5.5e-37 157.9 104 67.3
Lalb_Chr19g0132131 Lupinus albus HOM05D008019 ORTHO05D010184 3.0e-35 152.1 77 77.9
Hund19732 Selenicereus undatus HOM05D008019 ORTHO05D010184 1.5e-34 149.8 76 81.6
Sc10g0000030 Simmondsia chinensis HOM05D008019 ORTHO05D010184 9.8e-34 147.1 102 64.7
ATR0605G214 Amborella trichopoda HOM05D008019 ORTHO05D010184 9.1e-32 140.6 77 76.6
Zm00001eb101800 Zea mays HOM05D008019 ORTHO05D010184 8.0e-28 127.5 74 66.2
Zm00001eb101810 Zea mays HOM05D008019 ORTHO05D010184 1.0e-27 127.1 74 66.2
Gohir.D12G096933 Gossypium hirsutum HOM05D008019 ORTHO05D010184 1.5e-21 106.7 59 74.6
SEGI_33125 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 3.2e-16 89.0 51 68.6
Medtr8g036830 Medicago truncatula HOM05D008019 ORTHO05D010184 2.6e-10 69.3 59 52.5
Lalb_Chr19g0132141 Lupinus albus HOM05D008019 ORTHO05D010184 9.8e-10 67.4 49 61.2
SEGI_37443 Sequoiadendron giganteum HOM05D008019 ORTHO05D010184 3.0e-06 55.8 32 65.6


User provided reference genes

Program Settings