Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 1.1e-173 614.4 384 100.0
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 3.2e-101 373.6 372 73.9
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 9.9e-95 352.1 365 71.0
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 7.9e-92 342.4 248 71.0
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 6.2e-89 332.8 359 67.7
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 4.5e-87 326.6 245 69.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 7.4e-82 309.3 248 66.5
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 8.2e-65 252.7 343 60.6
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 5.0e-62 243.4 238 56.3
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 5.0e-62 243.4 246 54.9
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 9.4e-61 239.2 425 54.6
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 4.7e-60 236.9 243 53.9
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 7.9e-60 236.1 240 55.8
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 1.0e-59 235.7 242 54.5
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 3.9e-59 233.8 238 53.4
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 6.7e-59 233.0 215 57.2
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 2.0e-58 231.5 242 55.4
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.7e-57 228.4 245 50.6
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 2.2e-57 228.0 249 51.4
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 6.3e-57 226.5 241 51.5
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 8.2e-57 226.1 245 50.2
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.4e-56 225.3 243 51.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.8e-56 224.9 245 50.2
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 1.8e-56 224.9 245 49.4
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 3.1e-56 224.2 246 52.0
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 5.3e-56 223.4 248 50.4
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 7.7e-55 219.5 218 56.4
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.9e-54 217.6 205 58.0
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.9e-54 217.6 239 53.1
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.9e-54 217.6 176 64.8
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.9e-54 217.6 207 53.6
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 3.8e-54 217.2 195 57.9
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 5.0e-54 216.9 241 51.0
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.5e-54 216.5 239 52.7
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 6.5e-54 216.5 214 56.1
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.5e-53 215.3 292 44.2
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.2e-53 214.2 231 51.1
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 3.2e-53 214.2 240 49.2
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.2e-53 213.0 189 58.2
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 7.2e-53 213.0 238 50.0
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 9.4e-53 212.6 196 56.1
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.2e-52 212.2 238 48.7
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.6e-52 211.8 232 49.6
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.6e-52 211.8 237 51.5
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.6e-52 211.8 197 55.8
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 3.6e-52 210.7 169 62.7
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 3.0e-51 207.6 213 51.2
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 6.7e-51 206.5 199 57.8
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.4e-50 203.8 170 61.8
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 9.7e-50 202.6 219 50.7
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 2.2e-49 201.4 216 51.9
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.8e-49 201.1 190 53.7
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 8.2e-49 199.5 192 53.6
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 2.0e-47 194.9 236 49.2
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.6e-47 194.5 216 49.1
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 3.5e-47 194.1 212 50.5
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.5e-47 194.1 250 46.0
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.5e-47 193.7 149 63.1
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.5e-47 193.7 149 63.1
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 1.0e-46 192.6 241 46.9
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.3e-46 192.2 246 45.5
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 1.7e-46 191.8 165 57.0
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 2.2e-46 191.4 244 43.9
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.9e-46 191.0 186 52.2
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 2.9e-46 191.0 166 57.2
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 3.8e-46 190.7 166 57.2
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 3.8e-46 190.7 166 57.2
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 8.5e-46 189.5 212 50.0
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.9e-45 188.3 234 45.7
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 4.2e-45 187.2 169 56.8
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 1.2e-44 185.7 239 43.1
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 1.6e-44 185.3 230 47.0
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 2.7e-44 184.5 246 43.5
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.4e-43 182.2 159 56.6
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.3e-43 181.4 166 54.2
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 4.0e-43 180.6 172 53.5
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.5e-42 178.7 189 52.4
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.0e-42 178.3 328 50.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.8e-42 176.0 209 51.2
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.7e-41 175.3 196 47.4
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.8e-41 174.5 170 55.9
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-40 172.6 206 49.5
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 4.1e-40 170.6 120 69.2
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 4.5e-39 167.2 141 58.9
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 5.9e-39 166.8 171 50.9
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 1.5e-37 162.2 179 49.7
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.5e-37 162.2 206 46.1
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 4.2e-37 160.6 163 52.1
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.2e-37 160.6 139 57.6
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 9.4e-37 159.5 157 52.2
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 9.4e-37 159.5 157 52.2
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.6e-36 157.5 197 47.7
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 2.3e-35 154.8 213 45.5
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 3.0e-35 154.5 277 37.9
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 3.0e-35 154.5 129 59.7
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 6.8e-35 153.3 176 49.4
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 8.8e-35 152.9 147 53.7
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.2e-34 152.5 129 60.5
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 4.4e-34 150.6 152 52.6
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 7.5e-34 149.8 172 51.7
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.3e-33 149.1 107 65.4
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.2e-33 148.3 179 45.3
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 3.7e-33 147.5 128 58.6
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 4.1e-32 144.1 172 45.3
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 7.0e-32 143.3 116 59.5
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 7.7e-31 139.8 183 45.9
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 2.3e-30 138.3 184 45.7
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-29 136.0 170 47.1
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.6e-29 133.7 184 45.1
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.2e-28 132.5 165 48.5
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 3.6e-28 131.0 185 43.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.8e-27 128.6 134 50.0
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.0e-26 125.2 128 50.0
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 4.9e-25 120.6 128 48.4
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 4.1e-24 117.5 166 41.6
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 7.0e-24 116.7 168 44.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.3e-22 112.5 137 44.5
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 6.6e-22 110.2 180 40.6
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.5e-18 99.0 111 48.6
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 5.8e-18 97.1 185 33.0
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 4.0e-11 74.3 68 57.4
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 4.4e-10 70.9 61 52.5
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 6.0e-07 60.5 172 29.7
MSTRG.15411 Avicennia marina HOM05D006999 ORTHO05D008936 1.7e-06 58.9 170 27.6
Dinv29387 Davidia involucrata HOM05D006999 ORTHO05D008936 1.7e-06 58.9 182 26.4
Dinv39939 Davidia involucrata HOM05D006999 ORTHO05D008936 1.7e-06 58.9 166 25.9
CDE07G1890 Ceratophyllum demersum HOM05D001121 ORTHO05D003422 2.3e-06 58.5 114 29.8
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.0e-06 58.2 108 32.4
Nn5g29479 Nelumbo nucifera HOM05D006999 ORTHO05D008936 5.1e-06 57.4 186 25.8


User provided reference genes

Program Settings