Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 3.5e-155 552.0 368 100.0
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 4.7e-75 285.8 374 65.0
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 2.3e-74 283.5 370 61.4
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 4.0e-74 282.7 364 62.1
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 5.2e-74 282.3 364 65.1
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 2.6e-73 280.0 364 52.2
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 5.7e-73 278.9 373 66.0
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 8.3e-72 275.0 364 64.8
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 5.4e-71 272.3 388 64.2
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.6e-70 270.8 364 64.3
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 2.9e-69 266.5 397 63.0
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 3.8e-69 266.2 365 58.4
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 6.6e-69 265.4 367 63.2
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 8.6e-69 265.0 364 59.6
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 1.5e-68 264.2 368 61.4
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 2.1e-67 260.4 366 60.1
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 4.7e-67 259.2 364 65.4
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 6.1e-67 258.8 367 61.9
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.0e-66 258.1 364 62.6
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 3.4e-65 253.1 374 62.0
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 4.4e-65 252.7 369 61.5
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 5.8e-65 252.3 364 63.5
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 7.5e-65 251.9 369 48.2
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 9.8e-65 251.5 365 64.9
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 9.8e-65 251.5 376 62.2
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 1.3e-64 251.1 369 61.2
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.9e-64 250.0 362 61.3
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 1.1e-63 248.1 364 61.0
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 1.1e-63 248.1 367 59.1
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 2.4e-63 246.9 371 63.9
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 3.2e-63 246.5 374 61.8
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 5.4e-63 245.7 363 53.4
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 9.2e-63 245.0 363 61.2
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 9.2e-63 245.0 363 61.2
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 9.2e-63 245.0 363 52.6
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 3.5e-62 243.0 370 52.4
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 4.6e-62 242.7 373 57.6
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 4.6e-62 242.7 364 60.4
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 7.8e-62 241.9 363 60.3
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 1.0e-61 241.5 378 59.3
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 3.0e-61 240.0 379 54.4
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 6.6e-61 238.8 371 60.4
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 6.6e-61 238.8 363 63.6
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 1.1e-60 238.0 369 61.0
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.1e-60 238.0 363 55.9
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 7.3e-60 235.3 361 59.0
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 7.3e-60 235.3 373 60.9
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 7.3e-60 235.3 376 60.9
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 9.5e-60 235.0 380 60.8
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 9.5e-60 235.0 361 60.7
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.2e-59 234.6 361 60.7
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 1.2e-59 234.6 363 61.4
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 3.6e-59 233.0 367 53.7
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 4.7e-59 232.6 376 59.3
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 8.0e-59 231.9 362 57.7
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 8.0e-59 231.9 363 59.2
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 1.8e-58 230.7 389 60.7
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 2.3e-58 230.3 363 61.2
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 2.3e-58 230.3 364 57.1
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 2.3e-58 230.3 361 59.8
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 2.3e-58 230.3 364 59.1
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 1.2e-57 228.0 362 53.0
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 1.5e-57 227.6 361 57.6
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 2.6e-57 226.9 364 61.3
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 4.4e-57 226.1 364 53.6
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 4.4e-57 226.1 364 53.6
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 5.8e-57 225.7 364 52.5
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 7.5e-57 225.3 362 54.1
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 9.8e-57 224.9 363 44.4
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 2.2e-56 223.8 374 59.9
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 3.7e-56 223.0 367 55.6
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 6.4e-56 222.2 363 44.4
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 1.4e-55 221.1 366 55.2
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 1.9e-55 220.7 409 50.9
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 3.5e-54 216.5 363 54.8
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 1.3e-53 214.5 372 44.4
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 2.3e-53 213.8 379 45.1
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 3.0e-53 213.4 380 55.5
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 5.1e-53 212.6 383 58.5
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.5e-52 210.3 408 54.2
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 5.2e-50 202.6 364 53.3
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 7.5e-49 198.7 363 52.6
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 3.2e-47 193.4 172 61.0
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 1.2e-46 191.4 365 51.2
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 3.0e-45 186.8 314 58.6
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 1.6e-43 181.0 362 42.8
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 2.1e-43 180.6 385 48.3
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 6.8e-42 175.6 284 63.4
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 8.9e-42 175.3 353 51.0
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 3.4e-41 173.3 366 52.7
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 5.8e-41 172.6 217 50.7
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 1.7e-40 171.0 413 48.4
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 4.9e-40 169.5 153 62.7
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 9.2e-39 165.2 374 39.0
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 9.2e-39 165.2 158 60.1
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 9.0e-34 148.7 300 55.3
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 3.8e-32 143.3 153 54.9
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 3.5e-30 136.7 125 61.6
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 1.0e-29 135.2 260 57.7
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 2.3e-29 134.0 496 30.6
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 1.6e-27 127.9 115 60.0
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 2.1e-27 127.5 126 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 2.4e-26 124.0 407 38.8
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 2.4e-26 124.0 271 51.3
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 7.6e-25 119.0 141 49.6
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 7.9e-22 109.0 90 73.3
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 5.6e-20 102.8 176 36.9
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 9.6e-20 102.1 108 49.1
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.4e-18 98.2 79 73.4
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 1.4e-18 98.2 182 36.3
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 6.9e-18 95.9 93 55.9
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 9.0e-18 95.5 522 32.8
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 1.5e-17 94.7 92 53.3
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 7.6e-17 92.4 77 70.1
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 9.9e-17 92.0 97 53.6
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 2.9e-16 90.5 114 56.1
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.6e-12 76.3 85 47.1
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.6e-12 76.3 126 41.3
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-10 71.6 106 44.3
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-10 70.9 119 42.9
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-10 70.9 111 41.4
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.3e-10 69.7 108 43.5
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 9.0e-10 68.9 61 57.4
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 9.0e-10 68.9 71 52.1
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 1.0e-08 65.5 88 45.5
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 4.9e-08 63.2 109 41.3
arahy.Tifrunner.gnm1.ann1.3DHQ20 Arachis hypogaea HOM05D008215 ORTHO05D004366 8.4e-08 62.4 104 40.4
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 8.4e-08 62.4 92 44.6
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-07 62.0 92 44.6
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-07 62.0 123 35.8
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 1.4e-07 61.6 41 70.7
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-07 61.6 90 42.2
Oeu042970.1 Olea europaea HOM05D006566 ORTHO05D004366 1.9e-07 61.2 91 44.0
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-07 60.8 112 39.3
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.5e-07 60.8 92 43.5
arahy.Tifrunner.gnm1.ann1.PJX35B Arachis hypogaea HOM05D008215 ORTHO05D004366 4.2e-07 60.1 112 38.4
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 5.5e-07 59.7 92 42.4
arahy.Tifrunner.gnm1.ann1.8PL5QC Arachis hypogaea HOM05D008215 ORTHO05D004366 9.3e-07 58.9 92 42.4
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 2.7e-06 57.4 88 42.0
arahy.Tifrunner.gnm1.ann1.15M8G9 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.5e-06 57.0 92 41.3
arahy.Tifrunner.gnm1.ann1.N5TKCQ Arachis hypogaea HOM05D008215 ORTHO05D004366 6.1e-06 56.2 121 35.5
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 6.1e-06 56.2 92 41.3


User provided reference genes

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