Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 1.6e-98 362.8 199 100.0
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 5.6e-91 337.8 194 97.9
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 2.9e-71 272.3 158 81.6
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-65 253.8 157 76.4
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.8e-65 253.1 153 78.4
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 5.3e-65 251.5 153 76.5
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 6.9e-65 251.1 153 78.4
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.3e-63 246.9 158 73.4
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 8.5e-63 244.2 154 74.0
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 1.1e-62 243.8 151 74.2
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.4e-62 243.4 151 76.2
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.4e-62 243.4 151 76.2
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 1.4e-62 243.4 160 77.5
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 2.5e-62 242.7 150 76.0
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 5.5e-62 241.5 151 74.2
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 5.5e-62 241.5 151 73.5
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 5.5e-62 241.5 151 73.5
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 7.2e-62 241.1 151 74.8
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 1.6e-61 240.0 157 71.3
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 3.9e-60 235.3 154 75.3
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 1.1e-59 233.8 161 70.2
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.5e-59 233.4 154 74.7
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 2.0e-59 233.0 154 72.1
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.6e-59 232.6 155 72.3
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 4.4e-59 231.9 164 68.9
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 5.7e-59 231.5 157 72.0
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.8e-58 229.2 151 72.8
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 1.1e-57 227.3 167 68.3
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.8e-57 226.5 157 66.9
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.1e-57 225.7 157 70.1
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 4.1e-57 225.3 157 70.7
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 3.4e-56 222.2 158 67.7
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 4.5e-56 221.9 154 71.4
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 1.3e-55 220.3 158 68.4
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 8.5e-55 217.6 152 66.4
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.4e-54 216.9 152 66.4
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.4e-54 216.9 157 63.7
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.4e-54 216.9 157 63.7
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.4e-54 216.9 151 70.2
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 3.2e-54 215.7 157 66.9
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 7.2e-54 214.5 157 62.4
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-53 213.8 152 65.1
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.6e-53 213.4 155 66.5
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 4.7e-53 211.8 158 65.2
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.7e-51 204.9 152 64.5
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 6.3e-50 201.4 152 62.5
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 6.3e-50 201.4 157 61.8
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 5.3e-49 198.4 159 59.7
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 1.6e-48 196.8 157 64.3
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.0e-47 194.1 157 63.1
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 3.8e-47 192.2 154 60.4
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.8e-47 192.2 151 62.3
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 6.5e-47 191.4 128 71.1
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 8.5e-47 191.0 158 61.4
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.5e-47 191.0 153 62.1
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.5e-47 191.0 153 62.1
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.5e-47 191.0 153 62.1
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 5.5e-46 188.3 154 61.0
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 7.2e-46 188.0 156 60.3
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 9.4e-46 187.6 154 61.0
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.6e-45 186.8 153 58.2
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.6e-45 186.8 153 58.2
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.6e-45 186.8 158 60.8
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 2.1e-45 186.4 154 60.4
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 6.1e-45 184.9 149 61.1
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.4e-44 183.7 158 56.3
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 1.8e-44 183.3 187 48.7
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.2e-43 180.6 153 58.2
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.2e-43 180.6 153 58.2
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.2e-43 180.6 153 58.2
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.5e-43 180.3 153 58.2
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.5e-43 180.3 151 59.6
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 2.6e-43 179.5 153 58.2
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 3.3e-43 179.1 153 58.2
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.8e-42 176.0 155 54.8
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 4.8e-42 175.3 153 54.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 6.3e-42 174.9 148 62.2
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.8e-41 173.3 153 54.9
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 3.5e-40 169.1 163 53.4
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.2e-39 166.4 150 54.7
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 6.5e-39 164.9 150 54.0
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 1.5e-38 163.7 158 49.4
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 9.4e-38 161.0 149 53.7
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 6.1e-37 158.3 149 55.0
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 1.4e-36 157.1 150 52.0
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.4e-36 157.1 153 52.3
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 1.8e-36 156.8 149 51.7
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 2.0e-35 153.3 149 50.3
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 5.7e-35 151.8 147 50.3
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 7.0e-33 144.8 83 78.3
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 9.1e-33 144.4 149 44.3
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 2.0e-32 143.3 89 75.3
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.5e-30 137.1 108 60.2
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 5.5e-30 135.2 122 56.6
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 1.6e-29 133.7 81 79.0
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 2.1e-29 133.3 71 85.9
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.1e-29 133.3 71 85.9
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 2.1e-29 133.3 71 85.9
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.0e-28 131.0 71 84.5
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 1.0e-28 131.0 82 73.2
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.4e-28 130.6 198 39.9
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 3.0e-28 129.4 70 81.4
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 4.0e-28 129.0 71 84.5
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 5.2e-28 128.6 81 76.5
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 5.2e-28 128.6 70 80.0
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 5.2e-28 128.6 81 74.1
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 5.2e-28 128.6 111 55.0
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 5.2e-28 128.6 70 78.6
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 2.0e-27 126.7 70 78.6
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 2.6e-27 126.3 70 77.1
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 3.4e-27 125.9 70 78.6
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 9.8e-27 124.4 150 41.3
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 6.3e-26 121.7 150 40.7
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 3.5e-24 115.9 62 85.5
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 7.8e-24 114.8 69 73.9
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 5.0e-23 112.1 74 58.1
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.6e-21 107.1 89 62.9
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 2.2e-10 70.1 80 45.0
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 2.9e-10 69.7 66 45.5
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 3.5e-08 62.8 72 37.5
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 1.9e-06 57.0 65 36.9
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 3.3e-06 56.2 60 33.3


User provided reference genes

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