Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 5.4e-266 920.6 532 100.0
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.3e-153 547.4 531 61.0
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.0e-148 528.5 555 59.1
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.3e-147 526.6 530 57.9
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 2.3e-147 526.6 536 64.0
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 5.6e-146 521.9 531 58.9
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.1e-145 518.1 507 61.9
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 8.1e-145 518.1 531 61.2
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.1e-144 517.7 526 60.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-144 516.9 538 59.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 3.1e-144 516.2 519 60.9
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 6.9e-144 515.0 544 60.7
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 9.0e-144 514.6 539 59.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.6e-143 513.1 539 58.6
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-142 510.4 539 59.4
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 3.8e-142 509.2 535 57.9
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.6e-140 503.8 538 57.6
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 8.7e-139 498.0 536 60.1
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.8e-137 493.0 543 56.7
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 8.1e-137 491.5 543 58.2
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.4e-136 490.0 534 57.5
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.4e-136 490.0 537 57.2
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.3e-136 488.8 534 57.7
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.2e-135 487.6 534 57.1
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.5e-135 487.3 523 56.2
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.0e-135 486.9 534 57.1
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.6e-135 486.5 495 64.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 7.6e-135 485.0 541 61.7
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.0e-134 484.6 535 57.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 5.5e-133 478.8 517 60.3
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 7.1e-133 478.4 507 56.8
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 4.6e-132 475.7 527 56.2
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.3e-131 474.2 617 52.7
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.0e-131 473.0 526 56.3
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.0e-131 473.0 567 57.3
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.6e-129 467.2 533 55.7
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.8e-129 465.7 541 55.6
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 9.0e-128 461.5 486 57.8
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.5e-127 460.7 500 62.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.4e-127 459.5 555 54.2
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 6.5e-126 455.3 534 57.5
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 4.2e-125 452.6 544 54.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 7.2e-125 451.8 531 54.2
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.8e-123 447.2 489 58.1
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.0e-123 446.4 523 53.0
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 3.9e-123 446.0 527 53.1
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 8.7e-123 444.9 531 53.9
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.5e-122 443.4 531 54.0
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 4.3e-122 442.6 531 52.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 7.4e-122 441.8 534 53.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 7.4e-122 441.8 530 51.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.6e-121 440.7 540 57.0
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.1e-120 438.0 540 57.0
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 5.3e-120 435.6 514 57.0
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 7.7e-119 431.8 536 52.2
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 2.9e-118 429.9 529 54.1
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 2.9e-118 429.9 515 52.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 2.5e-117 426.8 506 52.0
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 2.5e-117 426.8 526 54.4
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 4.2e-117 426.0 503 56.5
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 5.5e-117 425.6 543 52.3
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.6e-116 424.1 525 55.0
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.1e-116 423.7 535 52.7
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 7.9e-116 421.8 532 50.0
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.4e-115 421.0 538 52.2
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.8e-115 420.6 535 51.4
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.1e-114 417.9 561 51.7
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 2.5e-114 416.8 527 50.7
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 7.4e-114 415.2 527 48.4
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.8e-112 410.6 529 52.9
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 9.1e-112 408.3 533 50.5
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.4e-111 406.4 550 48.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 5.9e-111 405.6 544 48.5
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.4e-109 401.0 546 48.2
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.5e-109 400.2 544 50.0
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 2.5e-109 400.2 533 48.6
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.7e-108 396.7 542 47.8
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 3.6e-108 396.4 563 48.8
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.8e-107 394.0 526 54.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.0e-107 393.3 526 53.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.0e-107 393.3 500 48.4
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 6.7e-107 392.1 546 48.0
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 1.5e-106 391.0 549 47.7
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.6e-106 390.2 527 47.6
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 5.7e-106 389.0 550 46.4
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 5.7e-106 389.0 533 49.3
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 5.7e-106 389.0 542 49.4
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 3.7e-105 386.3 553 46.7
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.7e-105 386.3 425 61.6
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 6.3e-105 385.6 510 49.2
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 6.3e-105 385.6 541 47.0
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.4e-104 384.4 535 48.2
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 5.3e-104 382.5 555 47.9
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 3.5e-103 379.8 539 48.6
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 4.5e-103 379.4 513 47.4
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 5.9e-103 379.0 515 48.2
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.0e-102 378.3 536 48.5
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.7e-102 377.5 548 46.9
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 2.9e-102 376.7 545 48.1
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.0e-102 375.9 525 46.1
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 6.5e-102 375.6 548 46.9
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.5e-101 373.6 531 48.8
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 4.2e-101 372.9 550 46.7
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 9.4e-101 371.7 509 47.7
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.6e-100 370.9 501 48.9
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 2.7e-100 370.2 542 50.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 6.1e-100 369.0 549 45.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 8.0e-100 368.6 515 47.8
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 5.2e-99 365.9 537 46.7
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 6.7e-99 365.5 566 50.0
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 6.7e-99 365.5 537 46.7
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.6e-98 363.6 537 46.6
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.3e-98 363.2 533 46.7
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.3e-97 361.3 556 45.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 3.7e-97 359.8 537 46.7
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.4e-96 357.1 391 56.0
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 2.7e-95 353.6 541 47.0
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.5e-94 348.6 520 42.9
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.2e-92 344.7 447 57.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 6.8e-91 339.0 513 48.1
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.5e-90 337.8 572 46.3
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.5e-85 320.5 512 42.8
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 2.1e-84 317.4 380 50.8
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.1e-84 317.4 373 55.0
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 9.8e-82 308.5 549 46.4
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 3.5e-79 300.1 376 54.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.3e-77 293.1 511 41.3
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 2.8e-76 290.4 523 44.6
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 7.5e-74 282.3 526 42.2
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.8e-74 282.0 515 41.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.4e-72 278.1 531 42.0
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.5e-71 273.5 512 38.9
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.6e-68 263.5 389 47.6
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.9e-65 253.1 280 53.9
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 7.0e-64 249.2 452 40.7
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 8.6e-62 242.3 608 36.3
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.1e-61 241.9 255 66.3
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 8.9e-59 232.3 416 37.5
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 1.5e-58 231.5 316 58.2
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.4e-56 224.2 230 58.3
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.2e-50 205.3 420 36.2
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 4.9e-49 199.9 328 42.4
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 3.2e-48 197.2 186 62.4
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.1e-45 188.7 450 36.7
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.9e-45 188.0 408 37.5
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 8.9e-43 179.1 242 48.8
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.6e-42 177.6 472 34.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.4e-41 172.9 393 35.1
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.1e-40 172.2 387 34.4
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 9.3e-40 169.1 391 34.8
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.2e-39 168.7 435 34.5
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.0e-35 153.7 271 41.0
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 9.9e-34 149.1 557 31.4
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.2e-31 142.1 507 31.8
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.0e-30 137.5 232 45.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.9e-29 134.8 161 47.8
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 1.1e-27 129.0 150 53.3
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 9.0e-27 125.9 148 48.0
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.0e-26 124.8 171 45.0
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 2.0e-26 124.8 168 43.5
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.2e-25 121.3 432 31.0
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 2.1e-23 114.8 169 41.4
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 2.1e-23 114.8 349 33.2
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 2.0e-18 98.2 86 58.1
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 8.4e-17 92.8 73 61.6
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 5.1e-14 83.6 72 61.1
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.6e-12 78.6 149 34.2
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.1e-11 74.3 121 37.2
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 6.9e-11 73.2 108 41.7
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.0e-10 71.6 73 47.9
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.4e-10 70.9 251 40.6
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.3e-09 68.9 52 67.3
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.9e-09 67.8 81 44.4
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 8.5e-09 66.2 145 35.9
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 4.2e-08 63.9 147 37.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 3.9e-06 57.4 98 41.8


User provided reference genes

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