Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 9.5e-145 516.9 279 100.0
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 2.8e-136 488.8 249 93.6
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.8e-135 486.1 249 92.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 6.8e-135 484.2 247 93.5
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 8.9e-135 483.8 247 93.5
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 2.0e-134 482.6 247 93.1
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.6e-134 482.3 247 93.1
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 3.4e-134 481.9 249 92.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 5.8e-134 481.1 249 93.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 5.8e-134 481.1 247 91.9
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 9.8e-134 480.3 249 92.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 91.2
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 2.9e-133 478.8 249 92.0
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.7e-133 478.4 260 89.6
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 6.4e-133 477.6 249 91.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.1e-132 476.9 245 93.1
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 249 91.2
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.4e-132 476.5 249 90.0
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.9e-132 476.1 249 92.8
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.4e-132 475.7 249 90.4
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.4e-132 475.7 249 90.4
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 4.1e-132 474.9 249 92.0
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 5.4e-132 474.6 249 92.0
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 5.4e-132 474.6 249 90.0
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 5.4e-132 474.6 249 90.8
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.1e-132 474.2 249 91.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 7.1e-132 474.2 249 92.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 9.2e-132 473.8 248 90.7
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 9.2e-132 473.8 249 90.8
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 90.0
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 91.6
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 91.6
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 91.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 91.6
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 91.2
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 91.2
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 90.4
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 1.2e-131 473.4 249 89.6
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 1.6e-131 473.0 249 90.0
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 90.0
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 91.6
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 89.6
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 92.0
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 2.7e-131 472.2 249 90.8
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.7e-131 472.2 249 90.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.7e-131 472.2 249 90.0
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 3.5e-131 471.9 249 89.6
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 89.2
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 89.2
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 89.2
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 90.0
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 6.0e-131 471.1 249 91.2
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 6.0e-131 471.1 249 90.8
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 6.0e-131 471.1 249 90.4
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 7.8e-131 470.7 249 90.8
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.0e-130 470.3 249 89.2
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 1.0e-130 470.3 249 89.6
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.0e-130 470.3 249 89.6
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 1.3e-130 469.9 242 93.0
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.3e-130 469.9 249 90.4
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.3e-130 469.9 249 90.8
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.7e-130 469.5 246 90.7
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 89.6
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 89.6
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.8
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 3.0e-130 468.8 249 90.0
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 3.0e-130 468.8 249 90.0
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 3.9e-130 468.4 249 88.8
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 3.9e-130 468.4 267 85.4
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 90.4
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 5.1e-130 468.0 247 90.7
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 90.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.1e-130 468.0 246 89.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 88.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.1e-129 466.8 249 90.0
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 1.1e-129 466.8 246 90.7
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.1e-129 466.8 248 88.7
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.3e-129 465.3 249 89.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 3.3e-129 465.3 246 89.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 4.3e-129 464.9 249 89.6
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.3e-129 464.2 243 90.9
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 9.5e-129 463.8 249 89.2
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.1e-128 462.6 249 89.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.1e-128 462.6 245 90.2
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 6.2e-128 461.1 248 87.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 8.1e-128 460.7 244 90.6
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 8.4e-125 450.7 248 87.9
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.2e-124 448.7 249 87.1
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 2.3e-122 442.6 248 85.1
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 1.6e-120 436.4 346 66.8
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 6.9e-119 431.0 222 93.7
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 8.9e-119 430.6 249 84.7
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 2.0e-118 429.5 239 84.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 4.4e-118 428.3 228 90.8
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.9e-117 425.6 246 82.5
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 9.3e-116 420.6 261 80.1
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.6e-115 419.9 242 82.6
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 7.8e-115 417.5 249 82.3
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 4.5e-110 401.7 248 76.6
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 1.9e-108 396.4 216 89.4
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 7.1e-100 367.9 191 94.2
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 1.4e-95 353.6 244 69.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 5.8e-94 348.2 189 90.5
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-86 323.6 171 91.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.0e-86 323.2 171 91.2
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 1.1e-84 317.4 168 91.7
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 4.2e-84 315.5 181 86.2
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.3e-82 310.5 161 91.3
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.6e-80 303.5 183 82.5
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.4e-76 290.4 185 76.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.8e-74 283.5 164 86.0
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.0e-73 280.0 164 83.5
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.7e-73 278.5 164 84.8
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 7.4e-73 278.1 145 94.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.5e-70 268.9 171 78.4
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 3.2e-68 262.7 147 87.8
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 7.2e-68 261.5 213 66.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 2.1e-67 260.0 155 83.9
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.6e-67 259.2 142 86.6
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.8e-66 256.9 155 83.2
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 8.2e-64 248.1 156 78.8
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 6.1e-59 231.9 148 78.4
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 9.4e-52 208.0 190 55.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-51 207.2 151 71.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.3e-50 203.4 141 73.0
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 7.5e-41 171.8 93 87.1
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 7.8e-38 161.8 167 55.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 3.2e-31 139.8 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 6.6e-29 132.1 129 57.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.6e-27 127.5 71 85.9
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.0e-26 122.9 58 89.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.3e-24 117.9 93 63.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.3e-18 97.1 55 76.4
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 6.8e-18 95.5 55 74.5
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.2e-15 86.7 50 74.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 2.3e-13 80.5 46 73.9


User provided reference genes

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