Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 2.6e-84 315.5 172 100.0
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.9e-58 229.6 168 78.0
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 9.0e-53 210.7 171 71.3
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.5e-52 209.9 168 69.0
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.9e-52 207.2 172 71.5
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-51 206.8 167 74.9
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 8.4e-51 204.1 172 69.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.2e-49 200.3 168 66.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.1e-49 199.5 170 67.1
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.5e-49 198.7 161 70.2
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.3e-48 196.8 166 69.3
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.3e-48 196.8 170 66.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.8e-48 196.4 172 69.8
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 3.0e-48 195.7 173 67.1
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.5e-47 193.4 167 68.9
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 9.6e-47 190.7 169 66.3
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.6e-47 190.7 171 67.8
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.3e-46 190.3 165 69.7
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 8.1e-46 187.6 165 69.1
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 6.9e-45 184.5 168 65.5
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.5e-44 183.3 165 67.9
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.0e-44 183.0 174 69.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 3.4e-44 182.2 159 69.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 9.9e-44 180.6 170 67.1
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 9.9e-44 180.6 170 61.8
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.7e-43 179.9 170 64.7
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.2e-43 179.5 165 67.9
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.9e-43 178.3 168 63.1
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.4e-42 176.8 167 62.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 1.4e-42 176.8 164 65.9
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.9e-42 176.4 169 65.7
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.9e-42 176.4 184 59.8
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.2e-42 175.3 167 61.7
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 5.5e-42 174.9 171 62.0
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 5.5e-42 174.9 167 61.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 5.5e-42 174.9 169 63.3
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 7.1e-42 174.5 166 62.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.1e-42 174.5 167 62.3
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.2e-41 173.7 169 62.1
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.2e-41 173.7 160 65.0
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.7e-41 172.6 162 66.0
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.5e-41 172.2 159 66.0
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.8e-40 169.9 167 60.5
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.8e-40 169.9 149 69.1
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.0e-40 169.1 177 59.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 8.7e-40 167.5 167 61.1
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 8.7e-40 167.5 164 58.5
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 8.7e-40 167.5 164 58.5
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.1e-39 167.2 138 68.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.5e-39 166.8 168 61.3
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.9e-39 166.4 157 66.9
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.9e-39 166.4 171 59.6
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 5.6e-39 164.9 162 63.0
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 7.4e-39 164.5 162 63.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 7.4e-39 164.5 169 58.6
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 9.6e-39 164.1 173 59.5
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.1e-38 162.9 157 65.6
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.7e-38 162.2 157 65.0
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 8.2e-38 161.0 152 62.5
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.1e-37 160.6 160 60.0
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.1e-37 160.6 171 59.1
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.8e-37 159.8 157 65.6
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 4.0e-37 158.7 167 58.1
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 6.9e-37 157.9 186 56.5
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 9.0e-37 157.5 150 61.3
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.0e-36 156.4 159 60.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.0e-35 154.1 144 63.2
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.3e-35 153.7 150 62.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.7e-35 153.3 168 57.1
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 4.9e-35 151.8 165 55.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 8.4e-35 151.0 160 58.8
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 8.4e-35 151.0 178 56.7
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.1e-34 150.6 174 55.2
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.9e-34 149.8 124 72.6
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.9e-34 149.8 130 69.2
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.9e-34 149.8 141 64.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 2.5e-34 149.4 164 56.1
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 7.1e-34 147.9 168 55.4
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 9.3e-34 147.5 156 58.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.6e-33 146.7 141 64.5
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.6e-33 146.7 141 64.5
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.6e-33 146.7 165 56.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.1e-33 146.4 156 57.7
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.5e-33 145.6 158 57.0
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 4.6e-33 145.2 160 56.2
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 4.6e-33 145.2 160 56.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.3e-32 142.9 157 56.7
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 6.7e-32 141.4 153 57.5
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.1e-31 140.6 173 55.5
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.5e-31 139.4 157 59.9
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 2.5e-31 139.4 128 65.6
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.3e-31 139.0 157 58.0
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 4.3e-31 138.7 147 57.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 7.4e-31 137.9 179 53.1
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 7.4e-31 137.9 207 47.3
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.3e-30 137.1 169 53.8
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.3e-30 137.1 166 54.2
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.1e-29 134.0 165 52.7
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 3.1e-29 132.5 150 57.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 5.3e-29 131.7 159 52.2
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.0e-28 129.8 162 53.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.5e-28 128.6 146 58.2
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 5.9e-28 128.3 210 46.2
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.7e-27 126.7 141 55.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 6.5e-27 124.8 157 51.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.5e-27 124.8 165 50.9
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-26 123.6 148 58.1
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 7.2e-26 121.3 121 58.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 7.2e-26 121.3 114 65.8
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.1e-25 119.8 142 48.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 6.7e-24 114.8 172 48.3
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.1e-23 114.0 99 64.6
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.5e-23 113.6 152 53.9
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.4e-23 111.3 157 49.0
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.8e-22 109.4 180 45.0
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 4.1e-21 105.5 126 52.4
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.5e-20 103.6 117 55.6
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.4e-20 102.4 167 45.5
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 4.5e-20 102.1 92 72.8
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 4.5e-20 102.1 112 57.1
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 7.7e-20 101.3 117 54.7
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.0e-19 100.9 148 48.6
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.7e-19 100.1 163 46.0
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 2.2e-19 99.8 151 46.4
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.9e-19 99.4 108 54.6
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-18 97.4 96 58.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 3.6e-17 92.4 174 42.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 7.9e-17 91.3 152 45.4
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.0e-16 90.9 84 57.1
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.1e-15 87.4 87 65.5
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 4.8e-14 82.0 96 46.9
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.8e-14 82.0 78 57.7
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-13 80.1 78 61.5
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.1e-13 79.0 76 57.9
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.9e-13 78.2 78 60.3
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 6.9e-13 78.2 78 60.3
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.2e-12 77.4 85 62.4
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 2.6e-12 76.3 166 38.6
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 1.0e-11 74.3 86 51.2
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.9e-11 72.8 56 64.3
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.8e-11 72.4 56 69.6
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 2.5e-10 69.7 60 75.0
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.0e-08 62.8 62 61.3
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 5.7e-07 58.5 281 29.5
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 1.3e-06 57.4 96 47.9
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 3.7e-06 55.8 55 50.9


User provided reference genes

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