Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 1.4e-280 969.1 520 100.0
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 2.8e-225 785.4 455 85.3
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 1.4e-224 783.1 542 76.6
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 9.1e-224 780.4 516 77.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 4.5e-223 778.1 492 82.3
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 3.8e-222 775.0 513 77.2
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 3.8e-222 775.0 529 77.1
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 2.5e-221 772.3 483 79.3
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 7.2e-221 770.8 484 81.2
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 1.6e-220 769.6 475 80.2
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.7e-220 768.8 511 76.7
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 2.7e-220 768.8 511 79.1
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 6.1e-220 767.7 537 73.9
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 8.0e-220 767.3 480 81.0
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 3.0e-219 765.4 467 82.2
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 3.0e-219 765.4 473 81.8
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 5.2e-219 764.6 488 78.7
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 8.8e-219 763.8 437 85.4
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 8.8e-219 763.8 531 75.0
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 2.0e-218 762.7 468 81.0
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 2.6e-218 762.3 511 76.9
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 3.4e-218 761.9 496 78.2
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.8e-217 758.8 467 80.7
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 2.4e-216 755.7 547 72.8
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 4.1e-216 755.0 487 81.9
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 1.2e-215 753.4 489 78.7
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 1.6e-215 753.1 460 80.4
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 3.5e-215 751.9 497 76.1
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 1.0e-214 750.4 507 76.7
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 1.3e-214 750.0 488 77.9
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 3.8e-214 748.4 468 79.9
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.9e-213 746.1 490 76.1
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.9e-213 746.1 476 80.0
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 2.5e-213 745.7 462 81.8
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 4.2e-213 745.0 534 72.8
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 7.2e-213 744.2 467 80.5
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 7.2e-213 744.2 528 76.3
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 9.4e-213 743.8 431 84.5
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 1.2e-212 743.4 497 80.7
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 1.6e-212 743.0 498 76.7
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 1.6e-212 743.0 531 76.8
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 2.1e-212 742.7 489 77.9
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.7e-212 742.3 529 76.2
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 8.0e-212 740.7 492 76.8
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 8.0e-212 740.7 495 79.2
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.8e-211 739.6 527 75.5
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 3.0e-211 738.8 473 79.5
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 1.2e-210 736.9 424 84.7
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 1.2e-210 736.9 425 84.5
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 7.5e-210 734.2 480 79.0
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.7e-209 733.0 526 76.6
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 1.7e-209 733.0 446 81.2
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 1.1e-208 730.3 464 79.7
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.1e-208 730.3 509 75.8
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.0e-207 726.1 498 73.9
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 9.5e-205 717.2 497 76.9
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 1.6e-204 716.5 432 83.3
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 4.7e-204 714.9 553 67.8
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 6.8e-203 711.1 440 80.2
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 6.8e-203 711.1 485 76.7
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 8.9e-203 710.7 421 84.1
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 4.4e-202 708.4 448 80.1
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 3.7e-201 705.3 463 79.0
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 6.4e-201 704.5 417 84.7
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 6.4e-201 704.5 494 73.9
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 1.1e-200 703.7 525 72.2
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 1.1e-200 703.7 446 78.9
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 5.4e-200 701.4 526 71.3
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 2.0e-199 699.5 460 78.3
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 7.8e-199 697.6 504 72.4
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 7.8e-199 697.6 456 76.8
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 1.3e-198 696.8 487 76.4
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 1.7e-198 696.4 470 76.6
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 3.0e-198 695.7 517 73.1
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 3.9e-198 695.3 504 72.2
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.5e-197 693.3 457 76.8
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 1.5e-197 693.3 451 76.1
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 1.5e-197 693.3 452 76.1
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 1.5e-197 693.3 452 76.1
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 3.3e-197 692.2 452 76.1
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 9.5e-197 690.6 518 73.7
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 6.2e-196 688.0 517 72.3
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 5.2e-195 684.9 433 77.8
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 5.2e-195 684.9 487 76.4
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.0e-194 682.9 487 76.0
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 2.0e-194 682.9 485 74.8
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 2.0e-194 682.9 498 70.7
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 2.0e-194 682.9 443 77.2
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 4.4e-194 681.8 452 75.7
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 8.3e-193 677.6 463 73.4
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 1.2e-191 673.7 424 79.7
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 4.6e-191 671.8 529 71.1
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 7.8e-191 671.0 461 75.7
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.0e-190 669.1 537 70.9
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 6.2e-188 661.4 454 73.6
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.2e-186 657.1 516 70.2
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 1.2e-183 647.1 530 67.5
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 1.2e-178 630.6 488 71.3
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 9.9e-178 627.5 430 73.3
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 2.2e-177 626.3 424 75.5
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 3.3e-173 612.5 455 72.1
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 1.8e-171 606.7 357 84.6
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 2.6e-170 602.8 445 67.6
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 3.4e-170 602.4 426 70.9
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 4.4e-170 602.1 482 64.9
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 5.8e-170 601.7 438 70.8
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 7.6e-170 601.3 504 65.3
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 4.9e-169 598.6 396 77.8
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-164 583.6 483 64.2
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.1e-164 583.2 369 79.1
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 2.8e-164 582.8 481 64.7
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 4.0e-163 578.9 481 64.4
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 5.3e-163 578.6 366 77.3
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 9.9e-162 574.3 464 64.2
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 1.3e-161 573.9 421 75.1
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 9.3e-160 567.8 383 75.2
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 1.5e-157 560.5 419 70.6
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 4.0e-155 552.4 477 60.8
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.0e-154 550.1 477 60.2
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 3.5e-151 539.3 459 61.7
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 1.8e-150 537.0 418 65.1
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.0e-143 511.9 492 56.7
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 5.5e-136 488.8 525 53.3
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 3.0e-134 483.0 459 58.0
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-131 474.6 489 56.6
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-130 469.2 354 69.2
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 5.9e-130 468.8 438 58.7
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 1.7e-129 467.2 420 57.1
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 5.0e-129 465.7 344 66.6
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 1.4e-128 464.2 692 43.1
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 2.7e-127 459.9 454 54.0
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 2.3e-126 456.8 484 55.4
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 2.0e-125 453.8 491 49.9
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 2.6e-125 453.4 452 56.6
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 4.5e-122 442.6 417 59.2
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 2.3e-118 430.3 414 58.5
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 4.2e-112 409.5 420 51.4
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 2.2e-108 397.1 454 51.3
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 2.7e-106 390.2 460 49.8
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 3.5e-106 389.8 349 57.9
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 1.9e-104 384.0 293 65.9
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 1.2e-103 381.3 486 47.3
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 6.8e-102 375.6 281 70.1
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 5.5e-96 355.9 261 70.9
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 4.0e-94 349.7 321 57.0
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 1.2e-90 338.2 438 46.8
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 7.0e-83 312.4 393 43.0
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.2e-77 295.0 332 47.6
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 1.2e-77 295.0 188 74.5
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 2.0e-74 284.3 356 49.7
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 6.0e-74 282.7 233 73.4
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.6e-71 274.6 170 78.8
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 9.2e-59 232.3 311 49.5
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 2.1e-39 167.9 98 78.6
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 7.4e-32 142.9 102 67.6
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 6.9e-30 136.3 248 39.5
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 5.5e-27 126.7 106 62.3
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 1.2e-26 125.6 136 55.9
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 6.7e-25 119.8 93 71.0
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 4.3e-24 117.1 140 47.9
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 5.3e-22 110.2 154 47.4
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 2.0e-21 108.2 122 48.4
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.0e-20 105.9 70 67.1
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 3.8e-20 104.0 154 46.1
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 5.0e-20 103.6 154 45.5
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 1.1e-19 102.4 208 37.5
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.8e-17 95.1 74 63.5
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 3.0e-17 94.4 45 93.3
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 6.7e-17 93.2 227 32.2
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.4e-14 85.5 46 87.0
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 4.5e-13 80.5 75 48.0
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 5.9e-13 80.1 102 51.0
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 8.5e-12 76.3 87 50.6
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 2.5e-11 74.7 142 35.9
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 7.2e-11 73.2 122 37.7
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 8.8e-09 66.2 51 60.8
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 2.0e-08 65.1 199 25.1
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 4.4e-08 63.9 208 26.0
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 4.8e-07 60.5 29 93.1
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 6.3e-07 60.1 203 22.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 6.9e-06 56.6 203 22.2


User provided reference genes

Program Settings