Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 5.1e-98 361.3 212 100.0
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 9.6e-97 357.1 212 98.6
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 1.4e-47 193.7 215 68.4
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 2.4e-47 193.0 213 57.7
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 3.1e-47 192.6 166 74.7
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 1.5e-46 190.3 214 57.5
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 2.0e-46 189.9 211 67.3
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 1.0e-45 187.6 212 66.0
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 1.3e-45 187.2 212 66.5
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 1.3e-45 187.2 212 56.6
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 2.2e-45 186.4 212 63.7
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 2.9e-45 186.0 212 63.2
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 2.9e-45 186.0 212 67.9
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 2.9e-45 186.0 212 69.8
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 3.8e-45 185.7 214 58.9
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 6.5e-45 184.9 212 57.5
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 4.2e-44 182.2 212 68.4
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 9.4e-44 181.0 214 57.9
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 1.6e-43 180.3 212 66.0
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 1.6e-43 180.3 215 64.7
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 1.6e-43 180.3 215 64.2
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 1.6e-43 180.3 212 61.3
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 6.1e-43 178.3 212 67.9
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 6.1e-43 178.3 208 65.9
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 7.9e-43 177.9 213 63.8
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 7.9e-43 177.9 212 67.5
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 7.9e-43 177.9 212 67.9
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 3.0e-42 176.0 214 62.6
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 3.0e-42 176.0 215 54.4
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.9e-42 175.6 209 62.2
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 3.9e-42 175.6 212 67.0
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 8.8e-42 174.5 209 54.1
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 1.1e-41 174.1 212 63.7
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 2.0e-41 173.3 212 64.6
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 4.4e-41 172.2 208 65.4
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 4.4e-41 172.2 208 65.4
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 4.4e-41 172.2 210 64.3
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 4.4e-41 172.2 212 62.7
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 7.4e-41 171.4 212 57.5
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 2.8e-40 169.5 215 65.1
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 3.7e-40 169.1 216 59.7
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 3.7e-40 169.1 215 64.2
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 6.3e-40 168.3 210 62.9
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 1.1e-39 167.5 209 55.5
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 1.1e-39 167.5 207 54.6
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 1.8e-39 166.8 210 62.4
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 7.0e-39 164.9 214 65.0
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 2.0e-38 163.3 214 62.1
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 3.5e-38 162.5 213 53.1
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 3.5e-38 162.5 213 53.1
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 4.5e-38 162.2 210 61.9
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 7.7e-38 161.4 219 62.1
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 1.3e-37 160.6 212 61.8
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.2e-36 156.0 208 63.5
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 3.2e-36 156.0 209 61.7
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 1.2e-35 154.1 220 58.2
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 1.2e-35 154.1 209 49.3
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 4.7e-35 152.1 208 62.0
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.4e-34 150.6 207 52.7
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 2.3e-34 149.8 205 50.2
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 1.1e-33 147.5 211 58.8
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 4.8e-32 142.1 222 55.9
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 2.7e-30 136.3 223 56.5
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 3.5e-30 136.0 214 44.9
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 3.5e-30 136.0 220 44.5
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 4.5e-30 135.6 224 49.6
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 5.9e-30 135.2 226 51.3
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 7.7e-30 134.8 225 44.9
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 2.2e-29 133.3 219 50.2
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 2.9e-29 132.9 219 50.2
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 5.0e-29 132.1 220 44.1
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 1.9e-28 130.2 227 51.5
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 1.9e-28 130.2 212 45.8
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 1.6e-27 127.1 184 60.3
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 2.1e-27 126.7 226 44.2
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 2.1e-27 126.7 226 44.2
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 2.1e-27 126.7 226 44.2
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 4.7e-27 125.6 222 52.7
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 4.7e-27 125.6 170 63.5
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 6.1e-27 125.2 214 54.7
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 8.0e-27 124.8 214 45.3
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.8e-26 123.6 212 50.0
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 4.0e-26 122.5 221 52.5
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 1.2e-25 120.9 208 55.3
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 7.5e-25 118.2 167 63.5
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 1.3e-24 117.5 225 53.3
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 1.7e-24 117.1 221 52.9
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 2.2e-24 116.7 167 57.5
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 3.7e-24 115.9 167 62.3
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 3.1e-23 112.8 169 49.7
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 5.4e-23 112.1 229 52.4
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 2.7e-22 109.8 221 52.9
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 4.5e-22 109.0 169 49.1
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 1.7e-21 107.1 190 52.1
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 5.0e-21 105.5 172 51.7
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.9e-20 103.6 167 60.5
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 2.5e-20 103.2 165 56.4
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 3.6e-19 99.4 184 54.3
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 2.3e-18 96.7 160 41.9
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 2.2e-16 90.1 166 51.2
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 2.8e-16 89.7 191 49.2
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 2.8e-16 89.7 167 56.9
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 4.9e-16 89.0 204 41.7
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 4.5e-14 82.4 186 47.3
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 3.8e-13 79.3 82 59.8
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 3.3e-12 76.3 167 40.7
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 1.6e-11 73.9 146 43.2
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 3.6e-11 72.8 197 38.1
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 4.0e-10 69.3 101 47.5
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 3.4e-09 66.2 50 80.0
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.7e-09 65.5 157 35.0
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 9.8e-09 64.7 164 32.9
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 9.8e-09 64.7 131 41.2
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 9.8e-09 64.7 161 37.9
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.3e-08 64.3 196 35.2
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.7e-08 63.9 204 44.6
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.2e-08 63.5 176 35.2
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 2.2e-08 63.5 117 41.0
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 2.9e-08 63.2 164 36.0
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 4.9e-08 62.4 172 32.6
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 4.9e-08 62.4 169 33.7
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 6.4e-08 62.0 169 33.1
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 8.3e-08 61.6 167 35.3
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-07 60.8 121 40.5
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.4e-07 60.8 121 40.5
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 1.4e-07 60.8 178 32.6
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.8e-07 60.5 173 34.7
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.8e-07 60.5 168 35.7
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 1.8e-07 60.5 199 30.2
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 2.4e-07 60.1 172 35.5
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 2.4e-07 60.1 168 35.7
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 2.4e-07 60.1 178 33.1
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 3.2e-07 59.7 164 36.0
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 3.2e-07 59.7 170 34.7
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 4.1e-07 59.3 185 33.0
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 5.4e-07 58.9 156 34.0
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.4e-07 58.9 171 32.7
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 5.4e-07 58.9 176 32.4
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.0e-07 58.5 174 31.6
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 7.0e-07 58.5 174 31.6
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 7.0e-07 58.5 163 33.1
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 7.0e-07 58.5 121 40.5
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 9.2e-07 58.2 161 38.5
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 9.2e-07 58.2 190 33.2
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.2e-06 57.8 36 80.6
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.2e-06 57.8 65 56.9
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.6e-06 57.4 190 32.6
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 1.6e-06 57.4 167 34.1
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 2.0e-06 57.0 164 34.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.0e-06 57.0 121 38.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 2.0e-06 57.0 172 33.1
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.0e-06 57.0 53 60.4
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 2.0e-06 57.0 167 34.1
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.7e-06 56.6 184 35.3
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.7e-06 56.6 35 82.9
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.7e-06 56.6 35 80.0
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 2.7e-06 56.6 173 37.0
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.5e-06 56.2 174 35.6
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 3.5e-06 56.2 179 34.1
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.5e-06 56.2 189 35.4
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.5e-06 56.2 168 33.3
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.6e-06 55.8 65 55.4
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.9e-06 55.5 35 80.0
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 5.9e-06 55.5 35 80.0
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 5.9e-06 55.5 206 35.0
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 5.9e-06 55.5 162 36.4
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 5.9e-06 55.5 162 36.4
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 5.9e-06 55.5 162 36.4
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 5.9e-06 55.5 35 80.0
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 5.9e-06 55.5 168 33.3
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.9e-06 55.5 123 39.0
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 5.9e-06 55.5 177 32.2
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 5.9e-06 55.5 122 38.5
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 7.8e-06 55.1 117 36.8
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.8e-06 55.1 35 80.0


User provided reference genes

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