Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 0.0e+00 1081.6 538 100.0
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 4.4e-239 831.2 555 75.9
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.9e-214 748.8 525 70.3
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 4.0e-208 728.4 520 68.7
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.0e-204 714.5 515 67.0
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.3e-203 712.6 483 70.2
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 5.6e-202 708.0 537 66.3
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.1e-200 703.7 521 65.1
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 3.1e-200 702.2 485 68.7
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.5e-199 699.9 486 68.9
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.6e-199 699.1 523 65.2
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.8e-199 698.0 512 66.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 7.6e-199 697.6 485 68.2
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 7.6e-199 697.6 531 64.6
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 4.9e-198 694.9 519 66.9
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 4.9e-198 694.9 505 67.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.4e-197 693.3 483 67.9
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.6e-196 688.3 513 65.1
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 4.6e-196 688.3 486 69.1
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 6.0e-196 688.0 527 64.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.3e-195 686.8 509 66.8
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 8.7e-195 684.1 485 67.2
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 8.7e-195 684.1 488 67.4
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.5e-194 683.3 485 68.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.5e-194 683.3 488 67.4
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.9e-194 682.9 518 64.9
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.9e-194 682.9 483 68.3
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 4.3e-194 681.8 485 68.2
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 9.6e-194 680.6 487 67.1
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 9.6e-194 680.6 486 67.9
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-193 679.1 485 67.4
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 4.8e-193 678.3 493 66.9
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.1e-192 675.6 488 66.6
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 9.0e-192 674.1 494 66.8
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 4.4e-191 671.8 485 67.2
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.3e-190 670.2 485 67.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.8e-190 668.7 523 61.6
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.4e-189 666.8 468 69.0
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.4e-189 666.8 486 66.3
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 7.1e-189 664.5 485 67.0
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 2.1e-188 662.9 532 61.3
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.0e-187 660.6 482 65.8
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.3e-187 660.2 509 63.1
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.7e-187 659.8 549 60.1
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.7e-187 659.8 500 64.6
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 6.6e-187 657.9 489 65.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.1e-186 657.1 523 63.7
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-186 656.4 509 62.9
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.6e-185 653.3 532 59.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 3.6e-185 652.1 486 65.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.4e-184 650.2 509 62.7
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 4.5e-183 645.2 519 61.7
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.7e-182 643.3 491 62.3
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.8e-182 642.1 485 63.9
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 6.4e-182 641.3 556 57.7
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 8.4e-182 641.0 517 60.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 1.1e-181 640.6 517 60.0
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-181 639.8 533 59.7
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 7.1e-181 637.9 497 62.6
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 7.1e-181 637.9 492 63.0
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 7.1e-181 637.9 507 60.0
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 9.3e-181 637.5 485 65.2
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.1e-180 636.3 548 58.2
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 4.6e-180 635.2 484 61.4
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.3e-179 633.6 520 60.6
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 1.1e-178 630.6 508 60.6
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 3.3e-178 629.0 547 58.9
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 9.0e-176 620.9 487 61.0
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 2.0e-175 619.8 526 58.9
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 7.6e-175 617.8 473 63.8
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.3e-174 617.1 579 56.0
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.1e-173 611.3 546 58.1
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.3e-170 602.4 489 61.6
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.3e-169 600.5 527 57.5
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 4.8e-169 598.6 528 56.2
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.2e-169 598.2 416 68.8
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.6e-167 592.8 489 60.9
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.7e-166 590.1 489 60.9
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.9e-166 589.3 491 58.9
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.7e-164 582.8 531 56.9
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 6.1e-164 581.6 486 57.8
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 7.9e-164 581.3 521 56.2
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 3.3e-162 575.9 511 56.0
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.3e-162 575.9 493 57.0
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 7.4e-162 574.7 486 57.6
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.2e-161 573.2 523 54.7
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.8e-161 572.8 516 55.0
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.8e-160 570.1 488 58.0
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 1.3e-158 563.9 524 53.8
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-156 556.2 505 54.5
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 5.1e-155 552.0 512 54.3
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.1e-154 550.8 534 55.4
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 2.0e-154 550.1 521 53.7
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-153 547.0 508 53.3
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.8e-153 545.4 493 52.9
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 6.9e-152 541.6 529 55.0
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-151 540.0 415 64.3
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-148 530.0 526 53.0
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 7.9e-148 528.1 490 52.2
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.3e-147 526.6 526 51.9
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.0e-147 526.2 452 56.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.5e-143 512.3 392 65.8
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.7e-143 511.5 513 51.3
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 2.7e-140 503.1 492 54.9
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 3.0e-139 499.6 449 58.4
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.8e-136 490.3 478 53.6
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-136 490.3 490 51.8
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.1e-136 489.6 526 51.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 8.5e-134 481.5 408 57.4
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 1.5e-133 480.7 503 47.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-132 477.2 487 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 2.0e-130 470.3 505 47.5
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 2.6e-130 469.9 391 57.3
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 8.3e-129 464.9 391 57.3
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 7.7e-127 458.4 328 67.1
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.5e-125 454.1 494 46.0
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 5.7e-122 442.2 321 67.0
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 9.1e-120 434.9 344 63.7
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 5.9e-119 432.2 388 58.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.3e-115 420.2 453 48.3
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.4e-114 416.0 338 62.1
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.7e-113 412.9 286 67.8
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.2e-107 392.5 340 56.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 1.2e-106 391.3 411 50.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 9.8e-106 388.3 332 57.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.2e-103 381.3 329 58.7
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 1.5e-101 374.4 441 48.1
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 5.6e-101 372.5 641 34.3
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.2e-100 371.3 238 72.7
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.0e-86 323.6 240 60.4
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.1e-84 317.4 454 40.3
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-81 308.1 275 55.6
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.7e-81 307.8 220 61.4
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 4.4e-74 283.1 609 31.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-69 268.5 345 42.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-61 241.5 272 48.2
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.5e-61 241.5 148 72.3
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 2.5e-61 240.7 148 73.0
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 7.4e-61 239.2 169 65.7
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 6.2e-60 236.1 147 72.1
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 6.2e-60 236.1 518 31.5
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.8e-59 234.6 146 71.9
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.0e-59 233.4 178 62.9
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.2e-58 231.9 156 67.3
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 6.3e-52 209.5 146 65.1
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.8e-51 208.0 192 50.5
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 3.0e-46 190.7 125 70.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.8e-43 181.4 178 51.7
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.7e-42 176.0 130 62.3
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 2.5e-40 171.0 191 50.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.7e-39 167.5 195 43.6
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.7e-39 167.5 118 65.3
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.3e-37 160.2 168 45.2
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.0e-34 151.4 107 63.6
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.5e-34 150.2 140 56.4
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 5.5e-32 143.3 148 48.0
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-22 112.1 74 66.2
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-16 92.0 120 38.3
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 1.6e-15 88.6 89 46.1
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.4e-11 74.7 74 48.6
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 4.1e-11 73.9 74 50.0
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 8.0e-07 59.7 57 47.4


User provided reference genes

Program Settings