Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 8.3e-249 863.2 429 100.0
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.9e-189 666.0 426 79.6
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 9.4e-184 647.1 428 73.6
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.0e-182 643.7 428 75.9
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.0e-182 643.7 434 73.5
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.3e-182 642.5 424 73.1
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 8.8e-182 640.6 428 73.1
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 2.2e-180 636.0 431 72.2
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 8.2e-180 634.0 431 71.7
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 8.2e-180 634.0 431 71.9
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.8e-179 632.9 431 71.7
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 9.1e-179 630.6 421 72.2
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.2e-178 630.2 424 73.8
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.0e-177 627.1 427 71.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.7e-177 626.3 421 71.3
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 6.5e-177 624.4 435 71.0
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.9e-176 622.9 425 72.5
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 7.2e-176 620.9 424 71.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 7.9e-175 617.5 441 69.8
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.3e-174 615.9 423 73.0
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 3.9e-174 615.1 435 70.3
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 5.1e-174 614.8 424 71.2
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 6.7e-174 614.4 426 73.0
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.1e-173 613.6 426 71.8
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 3.7e-172 608.6 434 71.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 4.1e-171 605.1 427 70.5
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.5e-170 603.2 424 69.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.0e-170 602.8 429 68.8
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.0e-170 602.8 428 68.2
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.3e-169 600.1 422 67.5
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.9e-169 599.0 425 71.5
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.9e-168 596.3 424 68.9
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 3.2e-168 595.5 423 67.4
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 4.2e-168 595.1 422 70.6
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 7.2e-168 594.3 425 68.9
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.6e-167 593.2 422 66.6
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-167 592.8 424 72.2
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 4.7e-167 591.7 424 67.0
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 4.7e-167 591.7 422 68.0
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.0e-166 590.5 410 68.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.8e-166 589.7 429 68.5
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 5.2e-166 588.2 423 67.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 6.7e-166 587.8 424 66.0
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 8.8e-166 587.4 423 66.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.6e-165 585.9 422 65.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 3.3e-165 585.5 426 69.0
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 4.4e-165 585.1 423 71.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.4e-165 585.1 421 69.8
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 7.4e-165 584.3 425 66.6
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 9.7e-165 583.9 424 70.3
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.8e-164 581.6 421 69.6
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 6.3e-164 581.3 425 66.4
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 8.2e-164 580.9 424 68.2
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 1.8e-163 579.7 424 67.0
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 9.1e-163 577.4 433 66.1
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.2e-162 577.0 392 73.0
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.2e-162 577.0 425 68.2
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 2.6e-162 575.9 424 65.8
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.0e-161 573.9 425 66.4
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 5.0e-161 571.6 426 67.1
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.0e-161 571.6 462 65.4
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 8.5e-161 570.9 429 66.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 4.2e-160 568.5 429 66.0
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 7.2e-160 567.8 442 66.3
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 7.2e-160 567.8 425 69.2
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.2e-159 567.0 489 62.8
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.6e-159 566.6 430 68.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 2.7e-159 565.8 426 66.9
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 3.6e-159 565.5 430 67.2
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 6.1e-159 564.7 424 66.3
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 8.0e-159 564.3 424 66.0
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.0e-158 563.9 440 65.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 2.3e-158 562.8 431 62.9
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 6.7e-158 561.2 418 64.6
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.3e-157 558.9 458 63.5
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.4e-157 558.5 395 70.4
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 7.5e-157 557.8 452 65.3
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.8e-156 555.8 418 65.8
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 3.7e-156 555.4 421 66.3
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 7.0e-155 551.2 428 65.0
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.5e-154 548.9 393 71.2
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.5e-152 542.7 385 70.1
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 4.2e-152 542.0 339 73.5
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 5.5e-152 541.6 421 62.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 2.7e-151 539.3 476 58.6
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 3.6e-151 538.9 429 63.4
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.0e-149 533.1 424 62.7
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 3.4e-149 532.3 435 63.4
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.3e-148 530.4 395 66.8
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 2.8e-148 529.3 448 61.6
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 5.9e-146 521.5 425 63.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.0e-142 508.8 331 74.0
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 6.1e-135 485.0 319 70.5
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.3e-134 483.0 302 73.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 5.8e-133 478.4 310 73.9
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 2.2e-132 476.5 299 72.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.9e-132 476.1 304 73.7
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.9e-131 473.4 422 60.0
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 4.1e-131 472.2 338 66.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 5.4e-131 471.9 414 58.9
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.0e-130 468.4 326 67.8
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 5.0e-129 465.3 422 57.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 6.6e-129 464.9 434 53.2
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.5e-122 442.6 337 63.2
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.2e-117 427.6 431 51.3
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 5.8e-117 425.2 413 52.5
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.9e-115 420.2 435 54.0
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 2.3e-113 413.3 421 50.8
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.1e-105 385.6 321 61.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.2e-99 365.9 316 56.0
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-98 363.6 303 60.4
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.3e-97 360.1 279 66.7
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 9.3e-83 311.6 281 63.0
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.5e-74 283.1 199 61.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 8.5e-68 261.9 452 36.5
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.6e-66 256.1 381 41.2
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 2.3e-65 253.8 229 52.4
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 1.4e-57 228.0 579 30.4
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 3.7e-55 219.9 420 35.7
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 2.0e-53 214.2 250 48.8
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.2e-45 188.3 192 50.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 7.7e-45 185.7 142 66.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 6.1e-42 176.0 129 67.4
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.3e-41 174.1 119 72.3
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 9.8e-40 168.7 117 69.2
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.5e-29 133.3 122 61.5
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 7.2e-27 125.9 144 52.8
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.2e-26 125.2 255 36.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 3.3e-19 100.5 107 48.6
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 7.5e-16 89.4 60 68.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 1.6e-10 71.6 108 45.4
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.1e-09 68.9 62 54.8
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 8.3e-07 59.3 39 66.7


User provided reference genes

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