Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0539 Cannabis sativa HOM05D007137 ORTHO05D008982 4.4e-141 504.6 253 100.0
CANSAT80G1960 Cannabis sativa HOM05D007137 ORTHO05D008982 4.0e-126 454.9 223 99.1
Ciclev10005859m.g Citrus clementina HOM05D007137 ORTHO05D008982 1.0e-92 344.0 217 75.1
Actinidia09328 Actinidia chinensis HOM05D007137 ORTHO05D008982 1.7e-92 343.2 220 71.8
Potri.006G051500 Populus trichocarpa HOM05D007137 ORTHO05D008982 3.8e-92 342.0 214 75.2
Rhsim03G0024800 Rhododendron simsii HOM05D007137 ORTHO05D008982 7.9e-90 334.3 225 70.2
Dinv39605 Davidia involucrata HOM05D007137 ORTHO05D008982 5.1e-89 331.6 218 71.1
Duzib093G1775 Durio zibethinus HOM05D007137 ORTHO05D008982 5.1e-89 331.6 213 73.2
Thecc.05G153200 Theobroma cacao HOM05D007137 ORTHO05D008982 5.1e-89 331.6 223 71.3
Cfa016812 Carpinus fangiana HOM05D007137 ORTHO05D008982 8.7e-89 330.9 219 69.4
CSS0026997 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.1e-88 330.5 228 70.6
Rhsim03G0024600 Rhododendron simsii HOM05D007137 ORTHO05D008982 4.3e-88 328.6 225 69.3
TWI74G1615 Tripterygium wilfordii HOM05D007137 ORTHO05D008982 4.3e-88 328.6 223 70.9
Sc13g0001720 Simmondsia chinensis HOM05D007137 ORTHO05D008982 9.7e-88 327.4 209 72.7
Prupe.7G059700 Prunus persica HOM05D007137 ORTHO05D008982 1.8e-86 323.2 224 70.1
TAR369G0818 Trochodendron aralioides HOM05D007137 ORTHO05D008982 3.1e-86 322.4 227 67.8
FAN09G1348 Fragaria x ananassa HOM05D007137 ORTHO05D008982 6.9e-86 321.2 229 67.2
QL07p000577 Quercus lobata HOM05D007137 ORTHO05D008982 6.9e-86 321.2 219 72.1
RcHm_v2.0_Chr3g0482531 Rosa chinensis HOM05D007137 ORTHO05D008982 1.5e-85 320.1 225 68.4
CiPaw.09G038400 Carya illinoinensis HOM05D007137 ORTHO05D008982 2.0e-85 319.7 212 69.3
EL10Ac3g07093 Beta vulgaris HOM05D007137 ORTHO05D008982 2.6e-85 319.3 219 68.9
MSTRG.6429 Avicennia marina HOM05D007137 ORTHO05D008982 3.4e-85 318.9 220 68.2
MD12G1074200 Malus domestica HOM05D007137 ORTHO05D008982 4.5e-85 318.5 224 71.4
Migut.J01757 Erythranthe guttata HOM05D007137 ORTHO05D008982 5.9e-85 318.2 222 66.7
PGR004G0226 Punica granatum HOM05D007137 ORTHO05D008982 5.9e-85 318.2 216 68.1
FAN05G2215 Fragaria x ananassa HOM05D007137 ORTHO05D008982 1.7e-84 316.6 223 66.4
TPR.G10636 Trifolium pratense HOM05D007137 ORTHO05D008982 1.7e-84 316.6 214 70.1
FvH4_6g23850 Fragaria vesca HOM05D007137 ORTHO05D008982 2.2e-84 316.2 229 65.5
AUR62026042 Chenopodium quinoa HOM05D007137 ORTHO05D008982 2.9e-84 315.8 214 68.7
Hma1.2p1_2002F.1_g310780 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 2.9e-84 315.8 226 66.4
PGSC0003DMG400027277 Solanum tuberosum HOM05D007137 ORTHO05D008982 2.9e-84 315.8 230 64.8
Nitab4.5_0010636g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.4e-83 313.5 221 65.6
Haze_19852 Corylus avellana HOM05D007137 ORTHO05D008982 1.9e-83 313.2 218 68.3
Solyc04g015760.4 Solanum lycopersicum HOM05D007137 ORTHO05D008982 2.5e-83 312.8 213 67.1
Sopen04g007840 Solanum pennellii HOM05D007137 ORTHO05D008982 3.2e-83 312.4 213 67.1
Sabra06G0036100 Salix brachista HOM05D007137 ORTHO05D008982 7.2e-83 311.2 214 70.1
Gohir.A09G122000 Gossypium hirsutum HOM05D007137 ORTHO05D008982 9.4e-83 310.8 222 68.0
Gohir.D09G118100 Gossypium hirsutum HOM05D007137 ORTHO05D008982 1.2e-82 310.5 222 68.5
Gorai.006G136400 Gossypium raimondii HOM05D007137 ORTHO05D008982 1.2e-82 310.5 222 68.5
AUR62024453 Chenopodium quinoa HOM05D007137 ORTHO05D008982 1.6e-82 310.1 204 69.6
Lalb_Chr21g0316491 Lupinus albus HOM05D007137 ORTHO05D008982 2.1e-82 309.7 227 65.6
vmacro07849 Vaccinium macrocarpon HOM05D007137 ORTHO05D008982 2.1e-82 309.7 225 67.1
Phvul.007G252600 Phaseolus vulgaris HOM05D007137 ORTHO05D008982 2.7e-82 309.3 216 66.7
Lj5g0009390 Lotus japonicus HOM05D007137 ORTHO05D008982 4.6e-82 308.5 213 70.0
Peaxi162Scf00130g00019 Petunia axillaris HOM05D007137 ORTHO05D008982 4.6e-82 308.5 205 68.8
GSVIVG01033260001 Vitis vinifera HOM05D007137 ORTHO05D008982 4.6e-82 308.5 215 66.5
THA.LOC104818226 Tarenaya hassleriana HOM05D007137 ORTHO05D008982 6.1e-82 308.1 218 64.7
Nitab4.5_0005195g0030 Nicotiana tabacum HOM05D007137 ORTHO05D008982 1.8e-81 306.6 221 64.7
Medtr7g034355 Medicago truncatula HOM05D007137 ORTHO05D008982 3.9e-81 305.4 218 67.4
Ca_26019_v3 Cicer arietinum L. HOM05D007137 ORTHO05D008982 6.7e-81 304.7 218 66.5
Lsat_1_v5_gn_9_29000 Lactuca sativa HOM05D007137 ORTHO05D008982 1.5e-80 303.5 216 66.2
Hund24707 Selenicereus undatus HOM05D007137 ORTHO05D008982 1.5e-80 303.5 213 67.1
AL4G40070 Arabidopsis lyrata HOM05D007137 ORTHO05D008982 2.6e-80 302.8 211 64.5
Glyma.10G097900 Glycine max HOM05D007137 ORTHO05D008982 4.4e-80 302.0 216 66.7
AT2G41760 Arabidopsis thaliana HOM05D007137 ORTHO05D008982 5.7e-80 301.6 211 64.9
Thhalv10017217m.g Eutrema salsugineum HOM05D007137 ORTHO05D008982 5.7e-80 301.6 208 65.9
HanXRQChr15g0491151 Helianthus annuus HOM05D007137 ORTHO05D008982 1.3e-79 300.4 216 67.6
Carub.0004s2404 Capsella rubella HOM05D007137 ORTHO05D008982 1.7e-79 300.1 211 63.0
Cc06_g17570 Coffea canephora HOM05D007137 ORTHO05D008982 1.7e-79 300.1 218 66.1
ECA247G4023 Erigeron canadensis HOM05D007137 ORTHO05D008982 1.8e-78 296.6 229 62.9
Oeu008913.1 Olea europaea HOM05D007137 ORTHO05D008982 1.8e-78 296.6 216 65.3
Oeu008915.1 Olea europaea HOM05D007137 ORTHO05D008982 1.8e-78 296.6 216 65.3
CARHR136840 Cardamine hirsuta HOM05D007137 ORTHO05D008982 4.1e-78 295.4 209 63.2
Eucgr.A02346 Eucalyptus grandis HOM05D007137 ORTHO05D008982 9.1e-78 294.3 218 62.8
Nn2g15218 Nelumbo nucifera HOM05D007137 ORTHO05D008982 3.4e-77 292.4 222 62.2
Sp4g24030 Schrenkiella parvula HOM05D007137 ORTHO05D008982 5.9e-77 291.6 206 66.0
A03p23410 Brassica napus HOM05D007137 ORTHO05D008982 2.5e-75 286.2 235 57.0
BraA03t11558Z Brassica rapa HOM05D007137 ORTHO05D008982 2.5e-75 286.2 235 57.0
CsaV3_3G039290 Cucumis sativus L. HOM05D007137 ORTHO05D008982 5.5e-75 285.0 220 61.4
MELO3C009672.2 Cucumis melo HOM05D007137 ORTHO05D008982 9.4e-75 284.3 219 63.0
C03p27930 Brassica napus HOM05D007137 ORTHO05D008982 1.2e-74 283.9 229 57.2
Sed0021909 Sechium edule HOM05D007137 ORTHO05D008982 1.2e-74 283.9 219 62.6
Atru.BG.154.p Acer truncatum HOM05D007137 ORTHO05D008982 1.0e-73 280.8 213 65.3
BolC3t15165H Brassica oleracea HOM05D007137 ORTHO05D008982 3.0e-73 279.3 241 54.4
arahy.Tifrunner.gnm1.ann1.QC7DP1 Arachis hypogaea HOM05D007137 ORTHO05D008982 6.7e-73 278.1 220 62.3
Aqoxy1G00329 Aquilegia oxysepala HOM05D007137 ORTHO05D008982 2.0e-72 276.6 222 58.6
CAN.G1456.1 Capsicum annuum HOM05D007137 ORTHO05D008982 4.4e-72 275.4 185 67.6
Ah.04g151610 Amaranthus hybridus HOM05D000942 ORTHO05D000918 2.8e-71 272.7 196 66.3
PSO384G0937 Papaver somniferum HOM05D007137 ORTHO05D008982 8.2e-71 271.2 219 59.8
CAN.G676.70 Capsicum annuum HOM05D007137 ORTHO05D008982 7.0e-70 268.1 196 65.3
SalBow6G6768 Salvia bowleyana HOM05D007137 ORTHO05D008982 5.9e-69 265.0 247 57.5
Psat6g120120 Pisum sativum HOM05D007137 ORTHO05D008982 5.0e-68 261.9 160 75.0
Manes.09G022100 Manihot esculenta HOM05D007137 ORTHO05D008982 1.9e-67 260.0 224 61.2
arahy.Tifrunner.gnm1.ann1.F03MXT Arachis hypogaea HOM05D007137 ORTHO05D008982 1.6e-66 256.9 198 63.1
Cpa.g.sc92.53 Carica papaya HOM05D007137 ORTHO05D008982 6.7e-65 251.5 176 69.3
MBI17_g01631_MAGBIO Magnolia biondii HOM05D007137 ORTHO05D008982 2.2e-63 246.5 219 55.7
Os05g0387900 Oryza sativa ssp. japonica HOM05D007137 ORTHO05D008982 4.8e-63 245.4 210 56.7
Lju124C41G12 Lonicera japonica HOM05D007137 ORTHO05D008982 1.8e-62 243.4 221 55.7
SGA_v2.0_scaffold105G30410 Striga asiatica HOM05D007137 ORTHO05D008982 4.5e-61 238.8 178 64.6
Aa31LG1G23770 Aethionema arabicum HOM05D007137 ORTHO05D008982 2.9e-60 236.1 176 61.9
ATR0320G015 Amborella trichopoda HOM05D007137 ORTHO05D008982 8.0e-58 228.0 201 53.2
DCAR_020492 Daucus carota HOM05D007137 ORTHO05D008982 1.0e-57 227.6 165 67.3
HPP92_001018 Vanilla planifolia HOM05D007137 ORTHO05D008982 1.0e-57 227.6 204 54.4
CDE02G1742 Ceratophyllum demersum HOM05D007137 ORTHO05D008982 2.3e-57 226.5 182 57.1
CSS0041211 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 1.3e-55 220.7 188 59.6
ClCG10G017100 Citrullus lanatus HOM05D007137 ORTHO05D008982 1.8e-54 216.9 241 48.5
FAN02G0118 Fragaria x ananassa HOM05D007137 ORTHO05D008982 2.0e-48 196.8 130 71.5
Mapoly0062s0037 Marchantia polymorpha HOM05D007137 ORTHO05D008982 6.3e-47 191.8 208 45.7
Pp3c8_16370 Physcomitrium patens HOM05D007137 ORTHO05D008982 1.5e-43 180.6 176 47.7
Hma1.2p1_2520F.1_g323835 Hydrangea macrophylla HOM05D007137 ORTHO05D008982 1.2e-40 171.0 108 72.2
SMO353G0157 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 3.4e-40 169.5 198 46.0
SMO302G0006 Selaginella moellendorffii HOM05D007137 ORTHO05D008982 3.7e-39 166.0 210 43.8
Rhsim03G0024200 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.6e-29 134.0 161 46.0
VMungo0720G0821 Vigna mungo HOM05D007137 ORTHO05D008982 3.6e-26 122.9 98 59.2
Zm00001eb286980 Zea mays HOM05D007137 ORTHO05D008982 7.5e-24 115.2 81 58.0
CSS0024811 Camellia sinensis var. sinensis HOM05D007137 ORTHO05D008982 2.9e-23 113.2 81 63.0
CBR_g39180 Chara braunii HOM05D007137 ORTHO05D008982 1.3e-20 104.4 91 51.6
SEGI_00420 Sequoiadendron giganteum HOM05D007137 ORTHO05D008982 1.8e-17 94.0 91 50.5
Cre04.g217912 Chlamydomonas reinhardtii HOM05D007137 ORTHO05D008982 7.3e-11 72.0 106 35.8
Rhsim03G0024500 Rhododendron simsii HOM05D007137 ORTHO05D008982 1.7e-07 60.8 49 59.2


User provided reference genes

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